Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g02230 ATGGAAGACATCATTCGCGGGCTTAAACCTGCAGTATCTCGTTCTGGTGATGCTGTTGGAGTCATGAATATGTCTGCTTCTAACGGTACGACTGGGATGACTGGTGCTGATGATGCATTTAGTGCTCGAAGCCTTTTGGTGCCCGTGGCAGATAGCTTTTTCCAATTTGAGTCCACAGAACGAGATATTTCCAGACCGGACCATATGTCTGATCAGATGGTAAAGTCCCAGATTGCCAGTCACCCGCTTTATCCTAATATGGTGTCTGCTTACATCGAGTGCCAAAAGGTTGGAGCTCCACCAGAACTGGCGTTGCTTCTTGAAGAAATTGGCAGAGAAAATCATCCCATGGCCATGAGCTCTTGTAATGACCAGATGGAAGATGATCCTGCACTTGACGAGTTCATGGAATCATATTGTGAAATTCTTCATAGATACAAAGAAGAGCTATCAAGGCCTTTCAACGAAGCAACCTCATTTTTGAGCAGCATGGAATCGCAACTCAGTAGCCTTTGTAAGGAAACATTGACAATATCCTTGGACTATCGCTCTGGAAATGCGGCAGCAGGAACTTCTGAGGAGGAATCAAGTTTTGGGGAGGTGGATGTGACAGATTGCAATGACGAAACTACCACTCGCACTGCCGACCAAGAAATCAAAGAAATGCTACTACACAAATACAGTGGCTACCTAAGCAATTTGAGAAAGGAGTTTATAAAGAAACGAAAGAAAGGAAAACTACCAAAGGATGCACGGACGATACTGCTCAACTGGTGGAATACGCATTATAGGTGGCCATATCCCACGGAAGAAGAGAAACTGAAGCTGTCAGAGTTGAGTGGACTGGATCACAAGCAAATCAACAACTGGTTCATAAATCAGAGGAAACGACATTGGAAACCATCTGATGACATGAAATACGCTCTCTTGGAGAACGTTTCTTGTGGGAACCATGGTTCAACCTTTTGCCTTGACATTGAAAGTGGAAGTCATGAAACTGATGATCTTTGA 1011 0.4411 MEDIIRGLKPAVSRSGDAVGVMNMSASNGTTGMTGADDAFSARSLLVPVADSFFQFESTERDISRPDHMSDQMVKSQIASHPLYPNMVSAYIECQKVGAPPELALLLEEIGRENHPMAMSSCNDQMEDDPALDEFMESYCEILHRYKEELSRPFNEATSFLSSMESQLSSLCKETLTISLDYRSGNAAAGTSEEESSFGEVDVTDCNDETTTRTADQEIKEMLLHKYSGYLSNLRKEFIKKRKKGKLPKDARTILLNWWNTHYRWPYPTEEEKLKLSELSGLDHKQINNWFINQRKRHWKPSDDMKYALLENVSCGNHGSTFCLDIESGSHETDDL* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g02230 336 Pfam KNOX2 domain 126 172 IPR005541 GO:0003677|GO:0005634
Pte6g02230 336 Gene3D - 237 310 - -
Pte6g02230 336 ProSitePatterns 'Homeobox' domain signature. 276 299 IPR017970 GO:0000981|GO:0006355
Pte6g02230 336 SMART ELK_2 218 239 IPR005539 GO:0003677
Pte6g02230 336 SUPERFAMILY Homeodomain-like 240 307 IPR009057 -
Pte6g02230 336 ProSiteProfiles 'Homeobox' domain profile. 238 301 IPR001356 GO:0003677
Pte6g02230 336 MobiDBLite consensus disorder prediction 189 208 - -
Pte6g02230 336 SMART KNOX1_2 72 116 IPR005540 GO:0003677|GO:0005634
Pte6g02230 336 Pfam Homeobox KN domain 258 297 IPR008422 GO:0003677|GO:0006355
Pte6g02230 336 Pfam ELK domain 218 238 IPR005539 GO:0003677
Pte6g02230 336 SMART KNOX2_2 122 173 IPR005541 GO:0003677|GO:0005634
Pte6g02230 336 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 76 306 - -
Pte6g02230 336 ProSiteProfiles ELK domain profile. 218 238 IPR005539 GO:0003677
Pte6g02230 336 SMART HOX_1 240 305 IPR001356 GO:0003677
Pte6g02230 336 Pfam KNOX1 domain 74 115 IPR005540 GO:0003677|GO:0005634
Pte6g02230 336 CDD homeodomain 250 302 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g02230 Pte-Chr6 38048354 38050815 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g02230 30 322 Homeobox Transcription Factor Family AT1G23380 46.205 4.76e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pte6g02230 KNOX2 4.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g02230 - - qsa:O6P43_011033 375.17