Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g02224 ATGCCGTTGGGGAAGTATTACTGTGACTATTGCGACAAGGAATTTCAAGACACCCCATACGCCCGTAAACGACACCTTGTCGGTCTTCAGCATCTCCGAGCCAAAGCTCTTTGGTACGACTCTCTCAAATTCCAAGATCCTACTCAGCCTTATGCAGATGGAATCCTTAAAGGGGTTTGTAATCGCTTTGTCAAGACGGGATATTGCCAGTATGGCGACTCTTGCAAATACTTTCACCCCAAGAGCTTGCAAAATGTCAGTGCTCCTCAAGGTGTAGCAGGATTTGCGGGCAGTACAGAATCAAATACTGTTCTTGGGAATCAATCAAATGCTCCGGGTGTTTCCACTGGGAATATGCTGCAAGACAGTATGGGAGTGTCATGGGGCAACCTCCCTCCCTCATTAAAGCCTCCTCCCGAGGGAGGATATCCTCATCTTCCGTTCGTTGACTGGGGATAG 459 0.4837 MPLGKYYCDYCDKEFQDTPYARKRHLVGLQHLRAKALWYDSLKFQDPTQPYADGILKGVCNRFVKTGYCQYGDSCKYFHPKSLQNVSAPQGVAGFAGSTESNTVLGNQSNAPGVSTGNMLQDSMGVSWGNLPPSLKPPPEGGYPHLPFVDWG* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g02224 152 Pfam U1 zinc finger 5 37 IPR013085 GO:0008270
Pte6g02224 152 PANTHER NUCLEASE-RELATED 1 152 - -
Pte6g02224 152 Gene3D Classic Zinc Finger 3 55 - -
Pte6g02224 152 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 59 81 IPR000571 GO:0046872
Pte6g02224 152 SUPERFAMILY CCCH zinc finger 59 81 IPR036855 GO:0046872
Pte6g02224 152 ProSiteProfiles Zinc finger C3H1-type profile. 59 82 IPR000571 GO:0046872
Pte6g02224 152 SMART c3hfinal6 56 81 IPR000571 GO:0046872
Pte6g02224 152 SUPERFAMILY beta-beta-alpha zinc fingers 4 43 IPR036236 -
Pte6g02224 152 Gene3D - 56 110 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte6g02224 zf-U1 2.1e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g02224 K13152 - qsa:O6P43_007391 232.261