Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g02214 ATGCAAGGTTATTCTAATCCACCTAAAGGGACATCGCCTTGTAAGAGCTTACCTTCCCAATGTTTGCCTTCTCACAGTCCTAGGGTTAGTGATATGCATTTCAGAAATATTAGGGATGCAAGGTTTGGAAAGTTGGAAGAATACAATTCTGTAATTGATGAAATCCCAATGCCCGTTCCTTCTAGTGAGTTGGGTTTAAATCAAGATGAAGACGTGTTACCTTGGTTGAATTGTGCTATAGAGAATCCATTACAACATGAGTATAATTCTGATTTGTTTGCTGAATTATCTGGTGTCACGGCATGTGAGCTCAATAACCGTGAGAATTCATCTGTAGTTGATAAAAATATCAGTTATAACCATGCATACCAGTCCCATAAAAATTCTGTCCATGGTGGCGCAAGCTCAGAAGAAGGAAATGTCTCTAAAGTTTCTTATGGGGAAGGTGCCGGGGTTGCTATGCTTGATACGAACTCAAATCGATTATACCAACCATCGTCAGAACCCCAGATATCTATGACTTCTCTCCGATCAAGGGAATTCAATATTCACAGTAAGACAAATAATGGTTGTAGAAGTCTATATTCTGACGATGTGACTCCAGTTCCATCAACTAGTAGTTCTTCTGACTTTAAGATTTTGAACCAAGATTCGGTGTCACTTAACAATAGCTCCACCATGATGAATTTCTCTCATTTTGCACGACCTGCTGCTCTAGTGAGAACTAATCTTCACAGCATTGGTGCAATGTGTGGATTGCCTCCTGCAAGGACTGATAGCGTGGCAAATGAGGAAAGGAAATTCACTTCAAGTTTTAGTAATGCTCGAAAATCAACTCCAACCGACTCAAGTAATGGTTATGCCAAGCAATCAACAGAACAGGGAAAGCAGGGTATGCTGCCATCCATTGTTGACAGAACACCATTGCATTCAAAACCTTATCAAGACCATACTGCTGCTGCGAAACCATCTGAGCCTGTATCTAAAGTTGATGCGCCAAAAGATGAAGAGACCTCGTCTCAAATCCCTATTGAAGACACGGCTATAGGATTGACAGATGGTGAGAAGAGTATGGAGCCTGTAGTGGTGTCTTCAGTCTGTTCAGGCTATAGTGTAGAGAAGGCTTCTGATGAATTAATTCCAAAAAAAAGGCGTAAAACTCTTGATACTGAAGAATCTGAATGGCATAGTGAAGATATTGAGGAAGAATCTGTGGGTGTGAAAAGAGCAGCTCTTGCTCGAGGAGGTTCAGGTTCCAAGAAAAGTCGAGCGGCAGAAGTTCATAATCTATCTGAAAGGAGGCGAAGAGATAGGATAAATGAGAAGATGCGTGTGCTACAAGAGCTCATACCAAACTGCAATAAGGTGGACAAGGCTTCAATGCTTGATGAAGCCATTGAGTATCTTAAAACACTTCAACTCCAAGTGCAGATGATGTCGATGGGAGCTGGCTTATGCGTGACACCTATGATGTTACCGACTGCAATGCAACACTTGCATAGTCCACTTATGCCTTCTTTTTTACCAATGGGTGTTGGGATGCAAGTTGGATTTGGAATGGGTTATGGGATGGGTATGCCCGACATAAATGGCACATCTTCTTATCCAATGATGCAGATACCTACAGTGCAAGGAAGTCAGTTTCCTACCCCACCTAAATCGGGGCAAATTGGTTTATATGGGATGGCTGGATCGACCCTTCAACTGTTTGGGCTACCTGGACAAGGACATTTTATTTTTCAATGA 1746 0.4187 MQGYSNPPKGTSPCKSLPSQCLPSHSPRVSDMHFRNIRDARFGKLEEYNSVIDEIPMPVPSSELGLNQDEDVLPWLNCAIENPLQHEYNSDLFAELSGVTACELNNRENSSVVDKNISYNHAYQSHKNSVHGGASSEEGNVSKVSYGEGAGVAMLDTNSNRLYQPSSEPQISMTSLRSREFNIHSKTNNGCRSLYSDDVTPVPSTSSSSDFKILNQDSVSLNNSSTMMNFSHFARPAALVRTNLHSIGAMCGLPPARTDSVANEERKFTSSFSNARKSTPTDSSNGYAKQSTEQGKQGMLPSIVDRTPLHSKPYQDHTAAAKPSEPVSKVDAPKDEETSSQIPIEDTAIGLTDGEKSMEPVVVSSVCSGYSVEKASDELIPKKRRKTLDTEESEWHSEDIEEESVGVKRAALARGGSGSKKSRAAEVHNLSERRRRDRINEKMRVLQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGLCVTPMMLPTAMQHLHSPLMPSFLPMGVGMQVGFGMGYGMGMPDINGTSSYPMMQIPTVQGSQFPTPPKSGQIGLYGMAGSTLQLFGLPGQGHFIFQ* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g02214 581 CDD bHLH_AtPIF_like 423 485 IPR047265 -
Pte6g02214 581 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 420 483 IPR036638 GO:0046983
Pte6g02214 581 MobiDBLite consensus disorder prediction 265 298 - -
Pte6g02214 581 Gene3D - 418 481 IPR036638 GO:0046983
Pte6g02214 581 Pfam Helix-loop-helix DNA-binding domain 427 473 IPR011598 GO:0046983
Pte6g02214 581 MobiDBLite consensus disorder prediction 262 340 - -
Pte6g02214 581 SMART finulus 429 478 IPR011598 GO:0046983
Pte6g02214 581 MobiDBLite consensus disorder prediction 412 431 - -
Pte6g02214 581 MobiDBLite consensus disorder prediction 1 26 - -
Pte6g02214 581 PANTHER TRANSCRIPTION FACTOR PIF3 15 578 IPR044273 GO:0003700|GO:0006355
Pte6g02214 581 FunFam Basic helix-loop-helix transcription factor 418 481 - -
Pte6g02214 581 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 423 472 IPR011598 GO:0046983
Pte6g02214 581 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g02214 Pte-Chr6 37949236 37953196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g02214 50 544 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 34.263 8.67e-56 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte6g02214 HLH 1.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g02214 K12126 - qsa:O6P43_007367 516.924