Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g02212 ATGGGAAGGCATTCTTGCTGCTACAAGCAGAAACTAAGGAAAGGCCTCTGGTCTCCCGAAGAAGACGAGAAACTTTTAAATCACATTACAAACCATGGCCATGGCTGTTGGAGCACTGTCCCCAAATTGGCCGGTTTGCAGAGATGCGGCAAGAGTTGCAGGTTGAGGTGGATAAATTACTTGAGACCAGATTTGAAGAGGGGTACATTTTCACAAGAGGAAGAGACCTTGATCATTGAACTCCATGCAGTTCTTGGCAACAGGTGGTCTCAGATTGCGGCTCAGTTGCCCGGAAGAACTGACAATGAAATAAAGAATCTATGGAATTCGTGCCTTAAGAAGAAGCTTCAGCAAAGAGGAATTGACCCCAACACTCACAAGCCGCTGTCGGAAGTTGAAAATGACAATGATAAGCCATCCTTAGCCACCGAAAACAGTGACAAAACCTCGGATGGATCGGAACATCTTGGTAATGTTGCTGAGGCTGCAAAGCAAAAACCACGTTCAGTGATTGGAAAGAGATACTCACAGCTTGAAGGGTCTTGCGCTTCCATAGTCAACAATGGTAGCAGTTGCTTTCATGATAACCTGACAAGTGCACTACCACCTAAACAGGACCTATTACCATATAAGTTCAGCACCTGCTCTGATAACTCCCCAACGAGTTGCAGACTTTCTGATATGGTGGGGTGTTTCTCTTTCCAGCAGTTGAATTATGGTCTCAATATGTGTGTCTCAGTAAATCCAAACAACTCTCTCTGTTTACTTCCAAATTCGACCAGTTCTGAGGTAATATCTGAGAGCATGATGCATTCCTCCTCAAGTTCAATTTTCCCATCACCGACACAAGTGAAGCCTACCGTTAGTCTTCCTTCTACGAATCCTTCTATAGCATCTGGCGATTTCGATGGTGTTCGGAACTGGGAAGCGGCCGGCACCTCCTTAAGCAGCAACAGCTTTGGAAGCAGTGGCTGTATCCGATTGCAAAGAGGCGGTAGCTTATCGGAAAACAACACGTTCTCGTGGGGACTAGCAGATTCTATGAAGTCTGGCAAACAAGGACATGTACATTCGTCACAAGGAGATGTGGAGGACATCAAATGGTCTGAATACGTTAGTAACCAATTTTTCACCGGAGAAAATTCAAATGGTCAGAATCAAACCACTCATTCCATCTACAGTGGTGTCAAACCTGAATCATTGTACAGTCAAACCCCAAGTAGCCTCCAAGCTTCAAATACATATACGAAGGACCTGCAGAGACTTGCTGTTGCTTTTGGACACGGCCTTTAG 1293 0.4517 MGRHSCCYKQKLRKGLWSPEEDEKLLNHITNHGHGCWSTVPKLAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEETLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLQQRGIDPNTHKPLSEVENDNDKPSLATENSDKTSDGSEHLGNVAEAAKQKPRSVIGKRYSQLEGSCASIVNNGSSCFHDNLTSALPPKQDLLPYKFSTCSDNSPTSCRLSDMVGCFSFQQLNYGLNMCVSVNPNNSLCLLPNSTSSEVISESMMHSSSSSIFPSPTQVKPTVSLPSTNPSIASGDFDGVRNWEAAGTSLSSNSFGSSGCIRLQRGGSLSENNTFSWGLADSMKSGKQGHVHSSQGDVEDIKWSEYVSNQFFTGENSNGQNQTTHSIYSGVKPESLYSQTPSSLQASNTYTKDLQRLAVAFGHGL* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g02212 430 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pte6g02212 430 SMART sant 13 63 IPR001005 -
Pte6g02212 430 SMART sant 66 114 IPR001005 -
Pte6g02212 430 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pte6g02212 430 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte6g02212 430 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pte6g02212 430 PANTHER MYB DOMAIN PROTEIN 55 1 336 - -
Pte6g02212 430 CDD SANT 17 61 IPR001005 -
Pte6g02212 430 MobiDBLite consensus disorder prediction 126 151 - -
Pte6g02212 430 FunFam Myb transcription factor 11 67 - -
Pte6g02212 430 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte6g02212 430 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pte6g02212 430 MobiDBLite consensus disorder prediction 119 165 - -
Pte6g02212 430 Gene3D - 11 67 - -
Pte6g02212 430 CDD SANT 69 109 IPR001005 -
Pte6g02212 430 Gene3D - 69 145 - -
Pte6g02212 430 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Pte6g02212 430 FunFam MYB transcription factor 68 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g02212 Pte-Chr6 37937187 37939295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g02212 1 431 MYB Transcription Factor Family AT1G09540 44.889 6.15e-109 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte6g02212 Myb_DNA-binding 4.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g02212 K09422 - qsa:O6P43_007365 491.115