Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g02196 ATGAGAAAAACTACCAAATCTTCCTCATCATCTGTTAGCAGCAGCAGTCGCCCTGCTATCTCTAGTAGTGCTTCCTCTTTCTCACAGCGGCAGGGAAGCCTCAGTACAGATCTTAGGCTTGGAACAAGCTTTCCAGGCTCCCAACCCTTGATCAATGACGTTTACATTTCTGGGGGACAAAGGCAACCATCAGAATATGGTCCACCTAGAAGTCAGTCACAATTGAGGGGGTCAGTTGTAGCTGAAGGAAAAGAATACATTTCTGAACACGCAAGCTTCTTCGTCAAGGTTTACATGGATGGCACTCTTATTGGCAGAAAACTCAATCTACTAGCTCACGATGGCTACGAAGACTTGATAAAGACTCTAGATCACATGTTTGATACAAATATTATCTGGGGAGATGGCATGGATACAATACAGTCTGAGACGTGTCATGTGCTAACATATGAGGATGAAGAAGGAGACTTTTTGATTGTTGGGGATGTTCCTTGGGAGATGTTCTTATCCACCGTGAAAAGATTGAAGATCACAAGGGTAGACACATGCGGATGTTAA 558 0.4373 MRKTTKSSSSSVSSSSRPAISSSASSFSQRQGSLSTDLRLGTSFPGSQPLINDVYISGGQRQPSEYGPPRSQSQLRGSVVAEGKEYISEHASFFVKVYMDGTLIGRKLNLLAHDGYEDLIKTLDHMFDTNIIWGDGMDTIQSETCHVLTYEDEEGDFLIVGDVPWEMFLSTVKRLKITRVDTCGC* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g02196 185 MobiDBLite consensus disorder prediction 52 75 - -
Pte6g02196 185 ProSiteProfiles PB1 domain profile. 92 182 IPR000270 GO:0005515
Pte6g02196 185 Gene3D - 86 184 - -
Pte6g02196 185 Pfam AUX/IAA family 86 179 IPR033389 -
Pte6g02196 185 SUPERFAMILY CAD & PB1 domains 88 177 - -
Pte6g02196 185 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 69 181 IPR003311 GO:0005634|GO:0006355
Pte6g02196 185 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g02196 Pte-Chr6 37834365 37835427 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g02196 48 177 B3 DNA Binding Superfamily AT1G59750 30.075 6.82e-13 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pte6g02196 AUX_IAA 6.3e-28 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g02196 K14484 - qsa:O6P43_007329 189.119