Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g02183 ATGCAGATCTTCGTGAAAACACTTACTGGGAAAACCATCACCCTCGAGGTTGAATCTTCTGATACAATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATACCGCCAGATCAGCAACGTCTGATCTTTGCCGGGAAGCAGCTTGAAGACGGACGAACCTTGGCCGACTACAACATCCAGAAGGAGTCAACCCTTCACCTTGTTCTGAGGCTTCGTGGTGGTGCCAAGAAGAGGAAGAAGAAAACGTACACCAAGCCCAAGAAGATCAAGCACAAGAAGAAGAAGGTCAAGCTTTCTGTTCTTCAGTACTACAAGGTGGATGGCATGAAAGTCCAGAGGCTGAGGAAGGAGTGCCCAAATGCGGAGTGTGGTGCTGGCACCTTCATGGCGAATCATTTCGACAGGCACTACTGTGTTCCTCTGCCTCTCACCCGTGAAACTAATGCCCCAGATTAA 462 0.4957 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQYYKVDGMKVQRLRKECPNAECGAGTFMANHFDRHYCVPLPLTRETNAPD* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g02183 153 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Pte6g02183 153 SMART ubq_7 1 72 IPR000626 GO:0005515
Pte6g02183 153 PRINTS Ubiquitin signature 32 52 IPR019956 -
Pte6g02183 153 PRINTS Ubiquitin signature 53 74 IPR019956 -
Pte6g02183 153 PRINTS Ubiquitin signature 11 31 IPR019956 -
Pte6g02183 153 SMART Ribosomal_S27_2 102 146 IPR002906 GO:0003735|GO:0005840|GO:0006412
Pte6g02183 153 SUPERFAMILY Ubiquitin-like 1 93 IPR029071 -
Pte6g02183 153 PANTHER UBIQUITIN 1 89 - -
Pte6g02183 153 Gene3D - 1 80 - -
Pte6g02183 153 CDD Ubl_ubiquitin 1 76 - -
Pte6g02183 153 Pfam Ribosomal protein S27a 102 140 IPR002906 GO:0003735|GO:0005840|GO:0006412
Pte6g02183 153 SUPERFAMILY Zn-binding ribosomal proteins 100 140 IPR011332 GO:0006412
Pte6g02183 153 Gene3D - 81 152 IPR038582 -
Pte6g02183 153 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Pte6g02183 153 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Pte6g02183 153 FunFam Ubiquitin-40S ribosomal protein S27a 1 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g02183 Pte-Chr6 37743801 37746105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g02183 1 140 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 91.489 8.76e-80 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g02183 K02977 - egt:105956612 227.639