Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g02171 ATGGCATCAGTGGGTGTTGCACCCACTTCTGGATTGAAAGAAGCAACTGGGACTTCAATTGATGTTGATAGGTTACCTAAGGAGATGAATGAAATGAAAATCAAGGATGAAAAAGAAATTGAAACAGCGGTGGTTGATGGAAATGGAACAGAGACAGGACACATAATTGTCACTACTATTGGTGGTAAAAACGGCCAGCCTAAGCAGACAATAAGCTATATGGCTGAACGTGTTGTTGGGAATGGATCCTTCGGTGTGGTATTCCAGGCAAAATGCTTGGAGACAGGTGAGACTGTTGCTATTAAAAAGGTTCTTCAAGACAAGAGGTACAAGAATCGGGAACTGCAAACCATGCGTTTTCTTGACCATCCAAATGTTGTAGCTTTGAAGCACTGTTTCTTTTCAACAACTGAAAAGGAGGAACTATACCTTAATTTGGTGCTTGAGTATGTACCTGAGACTGTTCATCGTGTGATTCGACACTACAACAAAATGAACCAGAGGATGCCATTGATTTATGTGAAGCTTTACTTTTACCAGATATGCAGAGCTCTTGCTTATATTCACAATACCGTTGGAGTGTGCCACAGGGACATAAAGCCTCAAAATTTGTTGGTCAATCCTCATACCCACCAGTTGAAGTTATGTGACTTTGGAAGTGCGAAAGTCCTGGTAAAAGGGGAGCCAAACATATCATACATCTGTTCTAGGTACTATAGAGCACCTGAACTGATATTTGGCGCAACTGAGTACACCACAGCAATTGACATCTGGTCTGCTGGTTGTGTTCTTGGGGAACTATTACTCGGGAAGCCTCTCTTTCCTGGTGAGAGTGGAGTAGACCAGCTTGTGGAAATCATTAAGGTTCTTGGAACCCCAACGAGGGAAGAAATCAAGTGCATGAATCCGAACTACACTGAGTTTAAATTTCCACAAATCAAAGCACACCCATGGCACAAGATATTTCACAAAAGAATGCCCCCTGAAGCTGTCGATCTTGTCTCAAGACTTCTACAGTACTCTCCCAACCTTAGGAGCACAGCTTTGGATATTCTGTCTCACCCGTTTTTTGATGAACTACGAGACCCCAATGCCCGACTACCTAATGGACGTTTCCTACCTCCATTATTTAACTTCAAAGCACATGAACTGAAGGGAGTGCCAGCTGAGATGTTGACGAAGCTAGTTCCACCACATGCAAGAAAGCAGTGTCCCTTGTTTGGGTCCTAA 1230 0.4309 MASVGVAPTSGLKEATGTSIDVDRLPKEMNEMKIKDEKEIETAVVDGNGTETGHIIVTTIGGKNGQPKQTISYMAERVVGNGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRFLDHPNVVALKHCFFSTTEKEELYLNLVLEYVPETVHRVIRHYNKMNQRMPLIYVKLYFYQICRALAYIHNTVGVCHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELLLGKPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRSTALDILSHPFFDELRDPNARLPNGRFLPPLFNFKAHELKGVPAEMLTKLVPPHARKQCPLFGS* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g02171 409 ProSiteProfiles Protein kinase domain profile. 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte6g02171 409 SUPERFAMILY Protein kinase-like (PK-like) 72 384 IPR011009 -
Pte6g02171 409 ProSitePatterns Protein kinases ATP-binding region signature. 79 103 IPR017441 GO:0005524
Pte6g02171 409 Pfam Protein kinase domain 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte6g02171 409 CDD STKc_GSK3 68 360 IPR039192 -
Pte6g02171 409 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 37 403 - -
Pte6g02171 409 Gene3D Transferase(Phosphotransferase) domain 1 153 401 - -
Pte6g02171 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Pte6g02171 409 FunFam Shaggy-related protein kinase kappa 153 401 - -
Pte6g02171 409 FunFam Glycogen synthase kinase-3 beta 57 152 - -
Pte6g02171 409 SMART serkin_6 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte6g02171 409 Gene3D Phosphorylase Kinase; domain 1 57 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g02171 Pte-Chr6 37672377 37675938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g02171 79 385 MAP Kinase Gene Family AT2G43790 35.737 4.50e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Pte6g02171 Pkinase 2.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g02171 K27413 - qsa:O6P43_007300 763.066