Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte6g02149 | ATGAAGGACCTCAACTTCGATACCGACAAGCTTCTGGCGAAGGACTTCCTGTCGAACTTTGCAGATGCCAGTGGTGAAGCCAAATATATGAAATTTCTACAAGAAATTGCAAACCGAAAAAGTCGAGCGATTCAGATCCAACTGGAGGACTTGAGCAATTACAAGGACATAGACGAAGGATTTCTTAGTCGGGTCACTGAGAATACTCGACGGTATATTGGAATATTTGCCGATGCAATTGATGAGCTATTGCCGGAGCCTACTGAGGCCTTTATAGATGACGATCATGACATATTGATGACACAGAGATCTGATGAAGGAGCAGAGAATGCAGATGGTTCTGACCCACGTCAGAAAATGCCTCCGGAGATTAAGCGTTACTTTGAAGTTTACATTAAAGCGCCTTCCAAGGGCCGGCCTTTTACTATCAGGGATGTGAAGGCTTCACATATTGGACAGCTCGTAAAAATATCTGGGATTGTCACCCGTTGTTCGGATGTCAAACCATTGATGCAGGTTGCTGTTTATACATGCGAGGATTGTGGTTTTGAAATTTACCAGGAAGTGACAGCTCGAGTCTTCATGCCTCTGATCGAGTGCCCCTCTAAGCGCTGTCTCACAAATAAATCAAAGGGAAACCTTATTCTTCAACTTCGCGCATCAAAGTTTTTAAAGTTCCAAGAGGCAAAAATTCAAGAATTAGCTGAGCATGTGCCAAAGGGTCATATTCCGCGGTCGATGACTATTCATTTAAGAGGAGAAATGACAAGAAAGGTAGCTCCTGGTGATGTGGTTGAACTATCCGGGATATATCTTCCTATACCATACACTGGTTTTAGAGCAATGCGTGCTGGCTTAGTCGCTGATACTTACTTAGAGGCCATGTCTGTTACCCACTTAAAGAAAAAATACGAGGATTACGAACTAGGAGATGAAGAAGAGCAAATTGCACGTTTAGCTGAGGATGGGGATATCTACAATACTTTGGCTCAGTCACTGGCTCCTGAAATTTTCGGACATGAAGATATTAAAAAAGCTCTACTTCTTCTACTTGTCGGTGCTCCTCATCGGAAACTGAAAGATGGGATGAAGATTAGAGGAGATCTACATATATGTTTGATGGGTGATCCGGGTGTTGCAAAGAGTCAGCTTCTTAAACACATAATCAACGTTGCACCCAGAGGGGTATACACTACAGGTAGAGGAAGCAGTGGAGTTGGTTTGACTGCTGCAGTTCAGAAAGATCCAGTGACAAATGAGATGGTTTTGGAAGGTGGAGCATTGGTGCTTGCAGATATGGGAATTTGTGCCATTGATGAATTTGATAAAATGGATGAGTCAGATCGTACAGCAATACATGAAGTTATGGAGCAGCAGACTGTCAGCATTGCAAAGGCTGGAATCACTACGTCCCTCAACGCCAGGACTGCTGTTCTCGCTGCAGCTAATCCAGCATGGGGGAGATATGATCTTCGCAGAACTCCAGCTGAAAACATTAATCTTCCCCCAGCGTTGCTATCAAGATTTGACCTTCTATGGCTAATCCTCGATCGTGCTGACATGGAAAACGATTTGAAGATGGCTAAGCATGTTGTCCATGTGCATCAGACAAGAAAACCTCCTTCTTTGGACTTCACACCCCTTGAGCCATCAATTCTTCGGTAG | 1665 | 0.4384 | MKDLNFDTDKLLAKDFLSNFADASGEAKYMKFLQEIANRKSRAIQIQLEDLSNYKDIDEGFLSRVTENTRRYIGIFADAIDELLPEPTEAFIDDDHDILMTQRSDEGAENADGSDPRQKMPPEIKRYFEVYIKAPSKGRPFTIRDVKASHIGQLVKISGIVTRCSDVKPLMQVAVYTCEDCGFEIYQEVTARVFMPLIECPSKRCLTNKSKGNLILQLRASKFLKFQEAKIQELAEHVPKGHIPRSMTIHLRGEMTRKVAPGDVVELSGIYLPIPYTGFRAMRAGLVADTYLEAMSVTHLKKKYEDYELGDEEEQIARLAEDGDIYNTLAQSLAPEIFGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGRGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMENDLKMAKHVVHVHQTRKPPSLDFTPLEPSILR* | 555 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte6g02149 | 554 | Pfam | MCM N-terminal domain | 14 | 133 | IPR027925 | - | |
| Pte6g02149 | 554 | Gene3D | - | 310 | 554 | IPR027417 | - | |
| Pte6g02149 | 554 | Pfam | MCM OB domain | 143 | 274 | IPR033762 | - | |
| Pte6g02149 | 554 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 335 | 535 | IPR027417 | - | |
| Pte6g02149 | 554 | SUPERFAMILY | Nucleic acid-binding proteins | 14 | 294 | IPR012340 | - | |
| Pte6g02149 | 554 | ProSiteProfiles | MCM family domain profile. | 325 | 531 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pte6g02149 | 554 | SMART | mcm | 139 | 554 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Pte6g02149 | 554 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 158 | 169 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Pte6g02149 | 554 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 193 | 205 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Pte6g02149 | 554 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 176 | 187 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Pte6g02149 | 554 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 285 | 295 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Pte6g02149 | 554 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 120 | 132 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Pte6g02149 | 554 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 454 | 467 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pte6g02149 | 554 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 366 | 381 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pte6g02149 | 554 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 426 | 440 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pte6g02149 | 554 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 505 | 513 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pte6g02149 | 554 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 478 | 490 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pte6g02149 | 554 | Gene3D | - | 143 | 271 | IPR012340 | - | |
| Pte6g02149 | 554 | Pfam | MCM P-loop domain | 313 | 535 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Pte6g02149 | 554 | ProSitePatterns | MCM family signature. | 434 | 442 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Pte6g02149 | 554 | Gene3D | - | 10 | 100 | - | - | |
| Pte6g02149 | 554 | Gene3D | - | 170 | 224 | - | - | |
| Pte6g02149 | 554 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 14 | 541 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Pte6g02149 | 554 | FunFam | DNA replication licensing factor MCM7 | 170 | 224 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte6g02149 | Pte-Chr6 | 37507185 | 37512941 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte6g02149 | 1 | 554 | Core DNA Replication Machinery Family | AT4G02060 | 83.423 | 0.0 | 974 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte6g02149 | K02210 | - | cave:132170884 | 1007.28 |