Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g02143 ATGAGTTGCAGAGTAGAAAACGAGTCTGTCGGGCAGCAGAGAATATGCGTTGATTGTCACACAACAAGAACCCCTCTATGGAGGCGGGGGCCTGCAGGGCCAAGGTCTCTTTGCAATGCCTGTGGGCTGAGATACAGAAAGAGAAGGAAGTCTCTGCTAGGGTTGCATCAAACGGAATTGGAGATGCAAAGCAATGAGAATACGAGTAGAAGCAGCAAAAACCTTAATCTGGGATTGGTGGATTTGAAAGAGGAAGAAGCAGCAGCAGTATTATTGATGGCTCTATCTTCTGATTGTATTACAGATCAAAAACACGATCGAACATAA 327 0.4526 MSCRVENESVGQQRICVDCHTTRTPLWRRGPAGPRSLCNACGLRYRKRRKSLLGLHQTELEMQSNENTSRSSKNLNLGLVDLKEEEAAAVLLMALSSDCITDQKHDRT* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g02143 108 Gene3D - 11 76 IPR013088 GO:0006355|GO:0008270
Pte6g02143 108 SMART GATA_3 10 67 IPR000679 GO:0006355|GO:0043565
Pte6g02143 108 ProSiteProfiles GATA-type zinc finger domain profile. 10 46 IPR000679 GO:0006355|GO:0043565
Pte6g02143 108 Pfam GATA zinc finger 16 50 IPR000679 GO:0006355|GO:0043565
Pte6g02143 108 ProSitePatterns GATA-type zinc finger domain. 16 41 IPR000679 GO:0006355|GO:0043565
Pte6g02143 108 CDD ZnF_GATA 15 49 IPR000679 GO:0006355|GO:0043565
Pte6g02143 108 PANTHER OS01G0976800 PROTEIN 8 97 - -
Pte6g02143 108 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 10 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g02143 Pte-Chr6 37479549 37482145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g02143 13 78 C2C2-Gata Transcription Factor Family AT4G16141 51.471 4.93e-22 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pte6g02143 GATA 3.8e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g02143 - - qsa:O6P43_010829 100.138