Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g02120 ATGGTGAGGAGGAAGACTCAGATGAAGCGGATAGAGAACGCAACAAGCAGGCAAGTGACCTTCTCAAAGAGACGTAGCGGGCTCTTAAAGAAGGCGTTTGAGTTGTCAGTACTTTGTGATGCTGACGTTGCTCTCATAATATTCTCGTCAAGAGGAAAGCTCTATGAATTCTCAAGCTCCTGTATGCAGAGTATTATAGAACGTTATAGAAGGCATACGAAAGATACTCATACACATCACATGTCAAATGAACCCAATTTGGAGCATTTAAAGGAAGAAGCTGCTTACATCAAATCGAAGATCGAGTTGCTTGAAGTTTCCAAAAGAAAATTCTTGGGAGAAGGTTTAGGACCATGTTCTGCTGAAGAACTGCAACAGCTAGAACAAGAACTGAGGAGGAGTGTAAGCAAAGTTCGAGCAAGAAAGACTGATGTTTACAAGGAACAAATGGAGAAACTTAAAGAAATGGAGAAATCTCTAGCAACTGAGAATGAAAGGCTTCTAGATAAGCGTGATATTCAGATGTCACAGTCTTTGCATCAGCCGCAAAGGAACACGCACCATGCAGACAGTAATTCAATTTCAGACGTGGAGACTGATTTATTCATAGGATTGCCAGAAACAAGAGCAAGACGCTTCACAAGTACTTAG 651 0.4132 MVRRKTQMKRIENATSRQVTFSKRRSGLLKKAFELSVLCDADVALIIFSSRGKLYEFSSSCMQSIIERYRRHTKDTHTHHMSNEPNLEHLKEEAAYIKSKIELLEVSKRKFLGEGLGPCSAEELQQLEQELRRSVSKVRARKTDVYKEQMEKLKEMEKSLATENERLLDKRDIQMSQSLHQPQRNTHHADSNSISDVETDLFIGLPETRARRFTST* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g02120 216 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte6g02120 216 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 175 - -
Pte6g02120 216 Coils Coil 121 141 - -
Pte6g02120 216 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte6g02120 216 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Pte6g02120 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte6g02120 216 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Pte6g02120 216 ProSiteProfiles K-box domain profile. 87 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte6g02120 216 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte6g02120 216 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte6g02120 216 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte6g02120 216 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Pte6g02120 216 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte6g02120 216 Coils Coil 146 170 - -
Pte6g02120 216 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte6g02120 216 SUPERFAMILY SRF-like 3 85 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g02120 Pte-Chr6 37306999 37314256 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g02120 1 155 MADS-box Gene Family AT2G45660 70.323 1.78e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte6g02120 K-box 2.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g02120 - - cave:132186361 270.396