Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g02113 ATGGAATTGTACGGTCGGAATTCAGGGAGAAATGGTTCGCAGTCCGGTGCTCAATCCGAATGGAGCCCAGTCGCTGCCGAGACTGGGCTTGAAGATTCCATGTGGCAATTGGGACTTGGTAACAGCCAGTCGTACCCAGAGAGACATGGTGTTCCTCATTGCGTATTTTACATGCGAACTGGGTACTGTGGATATGGTAGCAGGTGCCGTTACAATCATCCCCGTGATCGTGCTGCGGTTGTCGAAGCTGTTAGAGCCACAGGGGAGTACCCAGAACGAGTAGGGGAACCTGAATGTCAGCAGTATTATTTAAAAACTGGAACCTGTAAATTTGGTGCGTCCTGCAAGTTTCACCATCCGAAACATAGAGGCGGATGTTTAAACCAATCAGCAATAAATATTTTGGGCTACCCATTACGGCCGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCGCTGCAAATTTGGTCTAACTTGTAAATTCCATCATCCTCAACCAGCTGGATCATTGATACCAGCATCTGCACCTCAGTTTTATTCAGCGGTGCAGTCTCCTTCTGTTCCTCTACCTGAACAGTATGGAGCTTCTTCTAGTTTGAGGGTGGCCAGGCCTCCTATATTGACTGGTTCGTACATGCAAGGGGCTTATGGTCCTGTGCTTCTTTCTCCTGGGGTTGTCCCCATTCCTGGATGGAATCCCTACTCGTCACCTCTCAGTCCCGTGCTATCGCCTGGTGCCCAAACTGCCGTTGGGCCAAGTTCTCTGTATGGGGTGACCCAAGTATCTTCAACTCCAACATTTGGTAGAGGACATAATTCAGGTTCTTCTTATGCTGGCCCGTCTAGTAGTAGCCAGAAGGAACAACTTTTTCCTGAGAGACCTGGTGAACCAGAGTGTCAGTATTACATGAGAACAGGGGATTGCAAATTTGGACTCTCCTGTCGATTTCATCATCCTCAGGATCGGATCATCACAAGTCCAATGCTCAGCCCCTTAGGTCTTCCCCTACGTCCGGGAGCACAACCTTGTGCATTTTACATGCAAAATGGACTTTGCAAATTTGGACCGACTTGCAAATTTGACCATCCAGTTGGGACAGTAAGATACAGCCCATCAGCGTCGTCTCTTGATCTTCCAGTTACTCCTTTAGTTGGATCTCTGTTATCTAGCTTTGCTCCTTCATCAACTTCGGAGCTTCGTCCTGAATTGATCCCAGGGTCCAAAAAGGAATCCTATTCAACGAGAATGTCTTCTACTGGGAATACATCTAGTACTCCGGTCAGTTTGATTTTCTCCCAAGGTGGGCCTGTCTCTCTGTCTGAGGTGCAAATCTCTAGTCCGAGTTCTGCACCTATGACTAGTAGCAGAAGCACAAGACAAGGATCATGGAAGGGGGAAATCGAGTTACGAAATTAA 1422 0.4782 MELYGRNSGRNGSQSGAQSEWSPVAAETGLEDSMWQLGLGNSQSYPERHGVPHCVFYMRTGYCGYGSRCRYNHPRDRAAVVEAVRATGEYPERVGEPECQQYYLKTGTCKFGASCKFHHPKHRGGCLNQSAINILGYPLRPGEKECSYYLKTGRCKFGLTCKFHHPQPAGSLIPASAPQFYSAVQSPSVPLPEQYGASSSLRVARPPILTGSYMQGAYGPVLLSPGVVPIPGWNPYSSPLSPVLSPGAQTAVGPSSLYGVTQVSSTPTFGRGHNSGSSYAGPSSSSQKEQLFPERPGEPECQYYMRTGDCKFGLSCRFHHPQDRIITSPMLSPLGLPLRPGAQPCAFYMQNGLCKFGPTCKFDHPVGTVRYSPSASSLDLPVTPLVGSLLSSFAPSSTSELRPELIPGSKKESYSTRMSSTGNTSSTPVSLIFSQGGPVSLSEVQISSPSSAPMTSSRSTRQGSWKGEIELRN* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g02113 473 Gene3D - 43 128 - -
Pte6g02113 473 Gene3D - 293 377 - -
Pte6g02113 473 ProSiteProfiles Zinc finger C3H1-type profile. 93 122 IPR000571 GO:0046872
Pte6g02113 473 MobiDBLite consensus disorder prediction 7 22 - -
Pte6g02113 473 SUPERFAMILY CCCH zinc finger 300 324 IPR036855 GO:0046872
Pte6g02113 473 Gene3D - 129 174 - -
Pte6g02113 473 MobiDBLite consensus disorder prediction 394 473 - -
Pte6g02113 473 SUPERFAMILY CCCH zinc finger 142 168 IPR036855 GO:0046872
Pte6g02113 473 SUPERFAMILY CCCH zinc finger 50 77 IPR036855 GO:0046872
Pte6g02113 473 ProSiteProfiles Zinc finger C3H1-type profile. 295 323 IPR000571 GO:0046872
Pte6g02113 473 MobiDBLite consensus disorder prediction 263 298 - -
Pte6g02113 473 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Pte6g02113 473 ProSiteProfiles Zinc finger C3H1-type profile. 339 367 IPR000571 GO:0046872
Pte6g02113 473 ProSiteProfiles Zinc finger C3H1-type profile. 140 168 IPR000571 GO:0046872
Pte6g02113 473 MobiDBLite consensus disorder prediction 263 291 - -
Pte6g02113 473 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 297 322 IPR000571 GO:0046872
Pte6g02113 473 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 54 75 IPR000571 GO:0046872
Pte6g02113 473 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 167 IPR000571 GO:0046872
Pte6g02113 473 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 121 IPR000571 GO:0046872
Pte6g02113 473 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 343 365 IPR000571 GO:0046872
Pte6g02113 473 SMART c3hfinal6 339 366 IPR000571 GO:0046872
Pte6g02113 473 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Pte6g02113 473 SMART c3hfinal6 93 121 IPR000571 GO:0046872
Pte6g02113 473 SMART c3hfinal6 140 167 IPR000571 GO:0046872
Pte6g02113 473 SMART c3hfinal6 295 322 IPR000571 GO:0046872
Pte6g02113 473 MobiDBLite consensus disorder prediction 1 23 - -
Pte6g02113 473 SUPERFAMILY CCCH zinc finger 342 370 IPR036855 GO:0046872
Pte6g02113 473 PANTHER PROTEIN PHOSPHATASE RELATED 35 395 - -
Pte6g02113 473 MobiDBLite consensus disorder prediction 412 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g02113 Pte-Chr6 37229498 37233576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g02113 1 416 C2H2 Transcription Factor Family AT5G18550 48.864 1.16e-129 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte6g02113 zf-CCCH 1.4e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g02113 - - qsa:O6P43_007128 707.597