Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g02102 ATGACAGCTCATACGAAACCGTGTGATTTCGCACTTGGAGGTTTTTCATCGTTGTTGATATACGAGGAGATGAAGGCCGAGTACGGGGGCATTTCTAATAAAGGATTTGAGATGAAGTTGGGATATGGTACGAAATCAAGGTCAAACCGAGTTGTTCAGGACTGTACGGTGGCAGCAGATGGCTTGCAGCAGAGTTGTTGGGCCAATATGCCTCCAGAACTTTTGAGGGATGTGCTTGTGAGGATAGAGGCATCTGAAGATATATGGCCTGTGCGAAAACATGTGGTTGCCTGTGCTGGTGTCTGCCGCAGTTGGAGAGAAATCATGAAAGAAATTGTAAAACCTCCGCAAGTATCGGGCAAGTTGACATTTCCAATCTCCTTGAGACAGCCTGGCCCCAGCGGTGCTCTTCTTCAGTGCTATATAAAACGAAACAGAAGTAATCATACTTACTATCTCTACCTTGGCTTGAACCCAGCTTCCAATGATGATGGGAAGTTTCTCCTGGCTGCACGTAAGTACAGACGCCCAACTCACAGAGACTATGTCATTTCAGCAAATTCCGATAACATCTCAAGAGGGAGTAGTGCATATATTGGAAAGTTGAGATCGAACTTTTTGGCAACCAAATTTACTATTCATGGGGCAAAGCCTCGAATTGGTGGAGCCAAAGTTTCCAAATCCCTCTCCACGGGGCTGGTTAGTTTAAAGCAAGTGCCCCCTAATGTACCTGCTGGCAACCATCCTATTGCTCATATCTCCTATGAGTTGAATGTCTTAGGATCAAGGGGCCCTAGGATAATGCAATGCACCATGGATGCAATTCCTGCCTCTACTGTTGAGCCAGGAAGTGTGGCTCGTACACAAACTGGATTTATGCATAACAATCTCGATGCATCCCCATCCATTGGTTTATCAAGATCAAAATCAACCAGTGCAGAGAATTTTCAATCTGGCCACCCATCTGACCAAAATGATGAAAAGCTGGTACTGCGAAATAAGGCTCCTAGGTGGCATGAACAACTGCAATGCTGGTGTCTGAATTTTAATGGACGGGTTACAGTGGCTTCAGTTAAGAATTTCCAGCTGGTGGCTTCTTCAAAGAATGGATATGCCCAAGAAAATGTTATTCTTCAATTTGGAAAAGTTGGGAAGGATGTGTTCACCATGGATTACCAGTATCCAATCTCAGCTTTTGAGGCATTTGCAATATGCCTGAGCAGTTTTGATACAAAGATTGCTTGTGAATGA 1251 0.4444 MTAHTKPCDFALGGFSSLLIYEEMKAEYGGISNKGFEMKLGYGTKSRSNRVVQDCTVAADGLQQSCWANMPPELLRDVLVRIEASEDIWPVRKHVVACAGVCRSWREIMKEIVKPPQVSGKLTFPISLRQPGPSGALLQCYIKRNRSNHTYYLYLGLNPASNDDGKFLLAARKYRRPTHRDYVISANSDNISRGSSAYIGKLRSNFLATKFTIHGAKPRIGGAKVSKSLSTGLVSLKQVPPNVPAGNHPIAHISYELNVLGSRGPRIMQCTMDAIPASTVEPGSVARTQTGFMHNNLDASPSIGLSRSKSTSAENFQSGHPSDQNDEKLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVASSKNGYAQENVILQFGKVGKDVFTMDYQYPISAFEAFAICLSSFDTKIACE* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g02102 416 PANTHER TUBBY-RELATED 56 414 - -
Pte6g02102 416 ProSitePatterns Tub family signature 2. 401 416 IPR018066 -
Pte6g02102 416 MobiDBLite consensus disorder prediction 303 324 - -
Pte6g02102 416 CDD F-box_AtTLP-like 67 111 - -
Pte6g02102 416 Gene3D Tubby Protein; Chain A 126 416 IPR025659 -
Pte6g02102 416 Pfam Tub family 128 411 IPR000007 -
Pte6g02102 416 SUPERFAMILY Tubby C-terminal domain-like 116 416 IPR025659 -
Pte6g02102 416 MobiDBLite consensus disorder prediction 303 326 - -
Pte6g02102 416 Pfam F-box domain 67 113 IPR001810 GO:0005515
Pte6g02102 416 PRINTS Tubby superfamily signature 198 222 IPR000007 -
Pte6g02102 416 PRINTS Tubby superfamily signature 247 274 IPR000007 -
Pte6g02102 416 PRINTS Tubby superfamily signature 373 392 IPR000007 -
Pte6g02102 416 PRINTS Tubby superfamily signature 394 416 IPR000007 -
Pte6g02102 416 PRINTS Tubby superfamily signature 331 348 IPR000007 -
Pte6g02102 416 PRINTS Tubby superfamily signature 349 365 IPR000007 -
Pte6g02102 416 PRINTS Tubby superfamily signature 182 198 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g02102 Pte-Chr6 37158994 37162764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g02102 15 417 TUB Transcription Factor Family AT2G47900 69.927 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pte6g02102 Tub 7.4e-101 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g02102 K19600 - qsa:O6P43_007114 627.861