Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g02095 ATGGCGGAAGGTAAGAAAGAGAGAAAACCGGACGACGAGAGCATCAAACTTTTCGTTGGCCAAGTTCCGAAGAATATGTCGGAAGCTCAGTTGCTTGCAATGTTCAAGGAGTTCGCCTTGGTCGACGAGGTCAACATCATCAAGGATAAGATCACTCGTGCTTCCCGAGGGTGTTGCTTTGTAATATGCCCGTCGAAGCAAGAGGCTGATAAAGCTGTCGATGCTTGTCATAATAAAAAAACGCTTCCGGGGGCTGCTAGTCCATTGCAAGTGAAGTATGCAGATGGCGAGTTGGAAAGGCTAGAGAACAAGCTTTTTATTGGCATGCTTCCTAAGAATGTTTCTGAATCAGAAGTGCGATTGCTATTCTCAAAACACGGAACAATAAAGGACCTACAAATTTTAAGAGGTTCTCAGCAAACAAGTAAAGGCTGTGCATTTTTGAAGTATGAAACCAAAGAACAAGCCCTTGCTGCTCTGGACGCAATTAATGGAAAACATAAAATGGAGGGTTCAAGTGTTCCTTTGGTTGTCAAATGGGCAGATACTGAAAAGGAAAGGCAAGCACGGCGAGCTCAAAAGGCTCAATTGAAGCCATCTAATGTGCCAAATACTGATTCACAACATCCATCAATATTTGGAGCCATGCCAATGAGTTATGTTCCCCCTTATAATGGGTATGGTTATCAGACTCCTGGGCCTTATGGTATACTGCCATACCGCCTGCCACCCATGCACAACCAACCTGGTTTCCATAACGTGATCCCTCATGTGAATCAAGGAAATGCACTACGTCCTGACCTTACTCCCACCATGAGCCCTCGAAATTATGGTATTCCCCCTGCTAATTTTGTTGGTCCCTATCCTCCAGTTCCAGGTCTACAGCATCCAATGCCTTATCCTGGAGGCATGATGAGTCCCAGACCCTTGGGTGGTTCACCTGGTTCCATGCCTCCTGGAGATGTGCATAGTGGCTCTGCATCTTCAGGCACAAGTAGAAGTTCAGGGGATCAGATTGAAGGTCCACCTGGCGCAAATTTATTTATTTATCACATACCTCAAGAATATGGAGATCACGAGCTTGCTAATGCTTTTCAACAATTTGGTAGGGTCTTGAGTGCTAAAGTTTTTGTGGACAAAGCAACCGGTTCGAGTAAATGTTTTGGATTTGTGAGTTTTGATTCACCGGAGTCTGCTCAATCTGCCATTAGTGGCATGAACGGGTTTCAATTATTTGGTAAGAAATTGAAGGTCCAGCTGAAGAGGGACAACAAACAACAGAATAAACCTTACTGA 1296 0.446 MAEGKKERKPDDESIKLFVGQVPKNMSEAQLLAMFKEFALVDEVNIIKDKITRASRGCCFVICPSKQEADKAVDACHNKKTLPGAASPLQVKYADGELERLENKLFIGMLPKNVSESEVRLLFSKHGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALDAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQLKPSNVPNTDSQHPSIFGAMPMSYVPPYNGYGYQTPGPYGILPYRLPPMHNQPGFHNVIPHVNQGNALRPDLTPTMSPRNYGIPPANFVGPYPPVPGLQHPMPYPGGMMSPRPLGGSPGSMPPGDVHSGSASSGTSRSSGDQIEGPPGANLFIYHIPQEYGDHELANAFQQFGRVLSAKVFVDKATGSSKCFGFVSFDSPESAQSAISGMNGFQLFGKKLKVQLKRDNKQQNKPY* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g02095 431 CDD RRM1_2_CELF1-6_like 104 179 - -
Pte6g02095 431 FunFam RNA-binding protein BRN1 313 422 - -
Pte6g02095 431 CDD RRM3_CELF1-6 347 419 - -
Pte6g02095 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 345 423 IPR000504 GO:0003723
Pte6g02095 431 Gene3D - 2 99 IPR012677 -
Pte6g02095 431 SUPERFAMILY RNA-binding domain, RBD 8 97 IPR035979 GO:0003676
Pte6g02095 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 168 IPR000504 GO:0003723
Pte6g02095 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Pte6g02095 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 347 417 IPR000504 GO:0003723
Pte6g02095 431 MobiDBLite consensus disorder prediction 299 344 - -
Pte6g02095 431 CDD RRM1_2_CELF1-6_like 16 92 - -
Pte6g02095 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 164 181 IPR002343 GO:0003723|GO:1990904
Pte6g02095 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Pte6g02095 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Pte6g02095 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Pte6g02095 431 SUPERFAMILY RNA-binding domain, RBD 103 426 IPR035979 GO:0003676
Pte6g02095 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 183 IPR000504 GO:0003723
Pte6g02095 431 FunFam RNA-binding protein BRN1 2 99 - -
Pte6g02095 431 MobiDBLite consensus disorder prediction 322 339 - -
Pte6g02095 431 Gene3D - 320 422 IPR012677 -
Pte6g02095 431 SMART rrm1_1 346 419 IPR000504 GO:0003723
Pte6g02095 431 SMART rrm1_1 16 92 IPR000504 GO:0003723
Pte6g02095 431 SMART rrm1_1 104 179 IPR000504 GO:0003723
Pte6g02095 431 FunFam RNA-binding protein BRN1 isoform X1 100 192 - -
Pte6g02095 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Pte6g02095 431 PANTHER RNA BINDING PROTEIN 15 426 - -
Pte6g02095 431 Gene3D - 100 191 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g02095 Pte-Chr6 37103731 37107442 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g02095 344 427 Eukaryotic Initiation Factors Gene Family AT2G23350 33.333 3.79e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g02095 K13207 - qsa:O6P43_007105 697.967