Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g02050 ATGCGGGAAGGCTTAAGATCTGGCAAGGCTTTGGCAAAGTCAGTGCCATTGGAATTGGAGATCAATGATGTTTTTAGGAATGGAGCAGAGGGCTTGTGCTTAGTTTCGTCTAGCTTGGGTTATAAGGAAGAGTCATTAAGCCGGGGAAGTGAGAAGACGGTAACACAACGTGTAAAAAAAGATTGCGCCTCTGATATGGAATTTGCTTCGGATAATTGTGTTCACTCGTCTGTGCATAAGAAGGGACGAAAGAATTCAAGTAGGGGAAATGGTTGTCTTCAGAATGATAATAAGGAGAAGCAAGAACATTTGTCTGTTGAAGTCCAGTTTAGTGGCAGGGTTTTACGTTCAAGGTCTAAGTGTAATTTGCCTAGCGGAGAGGACGAAGCTATGTCTCTTCCCAAAGAGAGTGGGGATATTCTGGTATCAAAGAGAAAGATGAAGGCAGAGAAGGAAGATGATGATTTTGTTGTGGTTGGTGTTGACAATAATAAGATAAGACTTAATGTAGAAAACATAAATGCTCTTGGAACAGATGGTGGTTTAACAGACAAATCAAAACGTGGTAGAAAGCGAGGGAAATCTGCTGCGCTGAATATGGAAGAGCCTAATCAGTTTGCCAATACAGTTAACCACCAATCAAGTGGGAAGTGCCAGCTGTCCTCCAACACGAAGGGAAGTAACGGACTTGTGAAAGTGGTATCTCGCGAGAAAGTAATCCAAAATAGAAGGAAATTTTCTAATATGGAAGTCAATCTGAAGAATAATGCCCCATCGGATAGTAAACGAACACAAACAGTCTACAGTGGTTCGCATAAAGACTCAAAAGTGAAGAGTTCTTCATCTGCTAAGAAAGTATCGAGTAGCGAGGGAGATAAACAGAAAAGATCTACTAGGAAGCAGTTGCTAAGGGAAAAAATTGCTGAAATGCTCTTTACTGCAGGCTGGAAAGTTGATTATAGGCCTAGAAATAATAAGGATTACAATGATGCTGTGTATGTTAGTCTGGATGGGAAGACTCACTGGTCAATTACCTTGGCCTACAGGAGGCTCAAACAGCATTATGAGGCTGGTGATGGTGAAGATAAGGCATACAAGTCGGGATTTAAATTTACACCAATACCAGAAGAAGAATTCAATACACTGACTAAAGTGATGCTCAAAAAAAGAAAGGGAAAAAAGAATACTGAGAAAAAAGCTGAGAAGGATGGAGGGAAACAAAAGTTTGTGTTTAAAGTGAAGCCAGGGTCTGATCCATGTCCTGGGAAGCCAGGCAAGGGGAAAAATAAAAGGAAAATTACTGAGCAGGATCATTCAATTATGAGAGACCGAAAGAGACAAAAGTCACAAAATAGGAAGCGCTGTACAATTTTGGTTCGAAATGCAGAGAAGAAGGTTGAGTCAGGGAAAGATGGGTACACACCATATGATGGGAAAAGAACTCTGTTAACGTGGATGATTGATTCTGGAAGTGTCCCACTCAATTGTAGCGTCCTGTACATAAATCCTCGGAAGCAACGTGTGCTACGCCAGGGAAGGATTACTAGGGATGGCATTCATTGCGACTGCTGCAACGAGATTGTATCAATATCAGAATTTGAAGCTCATGCCAGAAGCAAACTCTTTGAGCCCCTTGAAAATATATATTTAGAGAGAGGAACTTCCCTACTGAATTGCATGCTAGAATCATGGAATAAACAAGATGAATCTGAACGAAAAAGTTTCCATTACATTGACATCAATACCGAAGATCCAAATGACGATACATGTGGGATTTGTGGAGATGGAGGGGACTTGGTTTGCTGTGATAGTTGCCCATCAACATTCCATCAAAGTTGCTTGGATATAAAGAATTTCCCTTCAGGTGATTGGAACTGCTGTTATTGCTGTTGTAAGTTTTGTGGTTTAGTTGGTGGGAGCACACATGAGAGGAAGGATGATGGTGATATAGCCATGTCTGCATTAATGTCATGCCGTTTGTGTGAGGAAAAGTATCACAAGAGCTGTTTTAAGGCAGAGGATGCAGCAATGGAGATTTTGCATGATTTAGGTTTTTGTGGAGATAAGTGCCAAGAGTTATTTAAGAGGCTTGAAATGCTTCTTGGGGTTAAACATGCAATGGAAGACGGATTCTCATGGACTCTTGTTCGCCGTTCAGATGTCTTCAGTGACTCCAAGATGAAAACTGAAGTGATTGAATCTAATTCTAAGCTAGCTGTTGCATTACTCATAATGGATGAGTGTTTTTTGCCCATAATTGATCACAGAAGTGGGACCAATATGATTCACAATGTTATATATAACCGTGGGTCAAACTTCAATCGCCTGAATTATAGTGGATTTTTTACTGCAATTCTTGAGAGAGGTGATGAGATCATATCTGCAGCATCTCTCAGACTCCGGGGTAATCAATTAGCAGAGATGCCATTTATTGGGACTCGATATTTGTATAGGCGTCAAGGGATGTGCCGTCGACTCCTTTGTGGTATTGAATCTGCTCTTTGCATGCTAAATGTGGAGCTGCTGGTCATTCCTGCTGTTTCAGAACTGAGGGACACATGGACTACAGCTTTTGGTTTTGTGCCACTCGAAGTAACGAACCAAAGCAAAATAAAGAACAAGAATTTCTTGGTGTTCCCAGGGGTTGATATGTTGCAAAAAAGGATAACAAGTCTTTCTAATGGTGAAAGTAAGGATTGCCAACTAGGGGATTGCCATACATTTGGTGGCATGTCAAACAGTTTTGATCAGTCATCCAATTTCAAGGTTTCTAATGAGGTTCCTCCAAGTGGGTGTGAGATCAAATCTGGCCTGCAGCTTGATGATGATGGTTTGAACAATGTCGCGAATCCAGAAGCATACAAGGTTGAACAGGGTTGTCTGTCTGGTCCTGGTTTCAAGGTTTCGGGTGAATTTTGTGATCCACAAAGATCTGAGATGAATGATCTAGCTGTATCTGTTGAACCTGTTTCTTTGGTTCTCAGCGGCTGCTTGACTGATGTAGTCAATACAGAGTCAAATAGTTTGAAACAAGGATGTTCCTCTGCACTGGAACCAAAGGTTCCTGAAATTTCTAAAATTATTGAATTTGGAATCAGTGATCTGGCAATATGTGGTCCTCAGCTTGCCTATGTTTCCATTAATGATGCACCTGATCATCAAAATGAAAATATTTGTCTAATCAAACCTGACTCTGTTCTGAGTGATCTGGAGAGCGCCATTAATGTAGCACAAAGGAAAGACACTCCAAGTTTTGTTCATCAGATAGCCAATTCCTGTTGCGAACTTCAAAGTGAAGATGAGAAAGTGACAGACATCGGTTCTCAATGCAACAAGTATCGTACTTCTGTGAAGGAATCGAAACTCCTCTATGAGAAGAGAGATGGTGTTGTTGAAAATGATGTAAACAGTTGTCTGGATTCTACTGAACACATTGGGCAAAATATTGCAGTCCAGATGGCAAATCACGAGGAGGAATTTAAACCTCCAGTTGACAACATCTCCCATGATTTAGAGTGTGGTAATCAGCCTTCTTGTGCCGCCGCTCATGTTGTGGATCCTGATTCTCGAGATTTGCCAAGGATTGGTTGTGCTTCTGATTTACCTGTACCCATCAATGGGGAGTGCATAACTAACCTATTACCTGTTGAGCCTTTATCTCTAGAATCTACACTGGAATGTGGTGAACCTACAATATGTTGCAGTCCTCAATTTTCACCAAGTGCAGGTGTCTCCTCTGAAGTAGTTCTACTGACCGGCAACTCATGTAATCCCAGAGCAGTGGATATTGTTGATGGTTTGTCTTTTGATTATGATGGTGAATCTTTTGGAGATGGTAATGTGGAATGCGACCATAAGGCAAATGTGAGGGACACAAAAGTTCCCAGTCAGCGGACTGGTATAAATGGTGAAGTTTGCCATTCAGCAAGGGTTGGTTCATGA 3942 0.413 MREGLRSGKALAKSVPLELEINDVFRNGAEGLCLVSSSLGYKEESLSRGSEKTVTQRVKKDCASDMEFASDNCVHSSVHKKGRKNSSRGNGCLQNDNKEKQEHLSVEVQFSGRVLRSRSKCNLPSGEDEAMSLPKESGDILVSKRKMKAEKEDDDFVVVGVDNNKIRLNVENINALGTDGGLTDKSKRGRKRGKSAALNMEEPNQFANTVNHQSSGKCQLSSNTKGSNGLVKVVSREKVIQNRRKFSNMEVNLKNNAPSDSKRTQTVYSGSHKDSKVKSSSSAKKVSSSEGDKQKRSTRKQLLREKIAEMLFTAGWKVDYRPRNNKDYNDAVYVSLDGKTHWSITLAYRRLKQHYEAGDGEDKAYKSGFKFTPIPEEEFNTLTKVMLKKRKGKKNTEKKAEKDGGKQKFVFKVKPGSDPCPGKPGKGKNKRKITEQDHSIMRDRKRQKSQNRKRCTILVRNAEKKVESGKDGYTPYDGKRTLLTWMIDSGSVPLNCSVLYINPRKQRVLRQGRITRDGIHCDCCNEIVSISEFEAHARSKLFEPLENIYLERGTSLLNCMLESWNKQDESERKSFHYIDINTEDPNDDTCGICGDGGDLVCCDSCPSTFHQSCLDIKNFPSGDWNCCYCCCKFCGLVGGSTHERKDDGDIAMSALMSCRLCEEKYHKSCFKAEDAAMEILHDLGFCGDKCQELFKRLEMLLGVKHAMEDGFSWTLVRRSDVFSDSKMKTEVIESNSKLAVALLIMDECFLPIIDHRSGTNMIHNVIYNRGSNFNRLNYSGFFTAILERGDEIISAASLRLRGNQLAEMPFIGTRYLYRRQGMCRRLLCGIESALCMLNVELLVIPAVSELRDTWTTAFGFVPLEVTNQSKIKNKNFLVFPGVDMLQKRITSLSNGESKDCQLGDCHTFGGMSNSFDQSSNFKVSNEVPPSGCEIKSGLQLDDDGLNNVANPEAYKVEQGCLSGPGFKVSGEFCDPQRSEMNDLAVSVEPVSLVLSGCLTDVVNTESNSLKQGCSSALEPKVPEISKIIEFGISDLAICGPQLAYVSINDAPDHQNENICLIKPDSVLSDLESAINVAQRKDTPSFVHQIANSCCELQSEDEKVTDIGSQCNKYRTSVKESKLLYEKRDGVVENDVNSCLDSTEHIGQNIAVQMANHEEEFKPPVDNISHDLECGNQPSCAAAHVVDPDSRDLPRIGCASDLPVPINGECITNLLPVEPLSLESTLECGEPTICCSPQFSPSAGVSSEVVLLTGNSCNPRAVDIVDGLSFDYDGESFGDGNVECDHKANVRDTKVPSQRTGINGEVCHSARVGS* 1314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g02050 1313 SMART PHD_3 589 630 IPR001965 -
Pte6g02050 1313 SMART PHD_3 631 691 IPR001965 -
Pte6g02050 1313 Pfam Tify domain binding domain 512 562 IPR032308 -
Pte6g02050 1313 MobiDBLite consensus disorder prediction 390 452 - -
Pte6g02050 1313 ProSiteProfiles Zinc finger PHD-type profile. 587 632 IPR019787 -
Pte6g02050 1313 MobiDBLite consensus disorder prediction 245 301 - -
Pte6g02050 1313 MobiDBLite consensus disorder prediction 181 203 - -
Pte6g02050 1313 PANTHER PHD FINGER PROTEIN 12 276 938 IPR042163 GO:0003714|GO:0045892
Pte6g02050 1313 MobiDBLite consensus disorder prediction 245 287 - -
Pte6g02050 1313 SUPERFAMILY FYVE/PHD zinc finger 579 635 IPR011011 -
Pte6g02050 1313 ProSitePatterns Zinc finger PHD-type signature. 590 629 IPR019786 -
Pte6g02050 1313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 578 692 IPR013083 -
Pte6g02050 1313 MobiDBLite consensus disorder prediction 78 98 - -
Pte6g02050 1313 MobiDBLite consensus disorder prediction 424 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g02050 Pte-Chr6 36835832 36842809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g02050 284 890 PHD Transcription Factor Family AT5G36670 46.560 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g02050 - - qsu:112014053 841.647