Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g02044 ATGGCCACCGAAGATGCGATCGCACCGGTCGACTCTGCAGTTGAACCGGTCCCTGATGTTCTAGTTGAGGAAAGCAATCCTGCACCCGAGAAAACAACCAAGCCGAAGAAGCCCAAAGAGCCTAAATCGAAGAAGGCTTCTGCTCCCAGAACCAGGAATCCCCCAAATCATCCTCCTTATGAAGAGATGACCAAGGATGCAATCGTGTCGTTGAAAGAGAAGTCTGGTTCAAGTCAATACGCGATTGCCAAGTTTATCGAAGAGAAACACAAACAACTTCCACCGAACTTCAAGAAGCTATTACTGTTTCATTTGAAGAAGCTCGTCAGTTCTGGAAAGCTTGTGAAGGTGAAAGGTTCTTTTAAGTTGCCACCTGCGAAGTCAGCTTCAGCAGCCAAGCCTTCTGCTCCGGCGAAGAAGAAGCCAGCTGCTTCTGCTACTGTTAAGTCCTCTAAGAGTAAAGTTCCCACTTCCAAGTCCAAGGTTGGGAGGTCGATGACCGCCGCGGCTAAAGCCCTGGCTAGTAAAAAGCTTGCTGCGAAAACAAAGGCCAAGGCTGCTCCACCGAAAGCGAAAGCTGCCGCTAAGCCGAAGACTGCTACCACCTCTAAGTCTAAGGCAACTGCTGCAAAGCCTAAGGCCTCTACTACGGCTAAGGCTAAAGCAGCTCCAAAGCCAAAGGCAAAGGAGAGACCTGCCAAGGCTTTCAGGACATCTGCGAGAACTTCACCTGGGAAGAAGCCTGCGGCTAAGCCGGCCCCGAAGAAAGCTGCCGCTGCTAAGAAGGTTCCGGCTAGGAGTGTGAAGCCCAAGAGCGTCAAGTCTTCGGGGAAGCAGTCTCCGGCCAAGAGAACCAGGAAATGA 864 0.5139 MATEDAIAPVDSAVEPVPDVLVEESNPAPEKTTKPKKPKEPKSKKASAPRTRNPPNHPPYEEMTKDAIVSLKEKSGSSQYAIAKFIEEKHKQLPPNFKKLLLFHLKKLVSSGKLVKVKGSFKLPPAKSASAAKPSAPAKKKPAASATVKSSKSKVPTSKSKVGRSMTAAAKALASKKLAAKTKAKAAPPKAKAAAKPKTATTSKSKATAAKPKASTTAKAKAAPKPKAKERPAKAFRTSARTSPGKKPAAKPAPKKAAAAKKVPARSVKPKSVKSSGKQSPAKRTRK* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g02044 287 MobiDBLite consensus disorder prediction 198 212 - -
Pte6g02044 287 MobiDBLite consensus disorder prediction 1 66 - -
Pte6g02044 287 MobiDBLite consensus disorder prediction 29 47 - -
Pte6g02044 287 CDD H15 54 123 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pte6g02044 287 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 56 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pte6g02044 287 FunFam Histone H1 51 136 - -
Pte6g02044 287 SUPERFAMILY "Winged helix" DNA-binding domain 53 135 IPR036390 -
Pte6g02044 287 Gene3D - 51 145 IPR036388 -
Pte6g02044 287 SMART h15plus2 54 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pte6g02044 287 PRINTS Histone H5 signature 43 64 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pte6g02044 287 PRINTS Histone H5 signature 208 227 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pte6g02044 287 PRINTS Histone H5 signature 70 87 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pte6g02044 287 PRINTS Histone H5 signature 186 203 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pte6g02044 287 PANTHER HISTONE H1 26 261 - -
Pte6g02044 287 MobiDBLite consensus disorder prediction 120 287 - -
Pte6g02044 287 MobiDBLite consensus disorder prediction 146 164 - -
Pte6g02044 287 Pfam linker histone H1 and H5 family 57 123 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g02044 Pte-Chr6 36797718 36799286 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g02044 54 124 Single Myb Histone (SMH) Gene Family AT1G49950 41.096 5.18e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g02044 K11275 - cit:102626409 137.887