Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g02042 ATGTCGAATCGAGTCGTGCAAGTGAGCAGGGAGAAACTTGATGCATGCATGACATGCCCACTTTGTGATAAGGTGTTCAAAGATGCGACAACCATAGCTGAATGTCTTCATACATTTTGCAGGAAGTGCATATATGATAAACTTTCTGATGAGGACATGAAACAGTGTCCAGTATGCAATACTAATCTGGGGCCTACACCACTGGAAAAATTGAGGCCAGATCATGACTGGCAAGATTTAAGGGCTAAAATTTTTCCAAGGAAGGAGAGAAGTGAAGTGAAGAAACGCGAAGCTTCTTCAGCAGTGACAGTGCCAGCAGAAGTTTCTTCATTACCACCAAAAAGAAAGGAAAGATCGCTTTCTTCATTAGCATTTGATACTCCCATAGTATCAAACCAAGCAACTGTGACCGGAAAGAGAACCAAGAATGTTACAAGAAAGGCTGCTGCCATACGAGGTTCCAGCTTCTCTATTGAGAAACCCATTAAGATAGAGGAAGATCATTTGAATATTTCAAGTTCACTTGAGAATTCAATCAAATTTTTGAATAATAGTAGCCAGAGTTGCTCCAGTGGGGAGCCTAGTCAATCTTCAGAACATAAGGAACAAGAAAATTGTGCTGAGCAATGTGAAGCAAAAGGAGATCTTTGGAAACCTCTAAATTATTTGGTGGAGGCTGCAAATAGGAGTAAATCATTAAAGTCTAGTTCCCAAGGATGTGATACTAAACCCGAAGCCAGACCAGTGAACGACAGTGAAGTTCAAGGCCGTGAATCCAAAAGCAAGGTCAGCAGGCGCAAAATAAAATTTGGAGATGAAAAGATAATTGCTGATCGCTCTCCCTATACAGCAAAATCTAATAAAACACGTAGGAATCCCCAAAAAAAGGAACCTATTGCAGAAGCAAGCATTTCACCTCAAGCAATAATGTATTCTGCCAGTGGCAAAAGTGATAGAAGAGAGGGTCCTGTTTGGTTCTCTCTTTTAGCTTCTGAAAACCAGGCAGGAGAAGCACCATTGCCACAAATTTCTGCTCGCTACTTGAGAATTATGGATGGCAGTGCATTTGTCTCGTACGTCCAAAAATACTTGAGAACAAAACTAGAGCTTGCCAGTGAAGAAGAGGTTGAGATACGATGCATGGGACAACCTGTGGACCCTGCACTGAAAATACATGAAATAGTTGATTCGTGGCTGCAATCAGCGCATAGATCACAACGAATTGCTGTGAAGATTGGTTCCCCAGCAGAGAAATATCTGGTGGTGCTGCGCTATGCTCGGAAGGTTGTGGATCATTGA 1299 0.4196 MSNRVVQVSREKLDACMTCPLCDKVFKDATTIAECLHTFCRKCIYDKLSDEDMKQCPVCNTNLGPTPLEKLRPDHDWQDLRAKIFPRKERSEVKKREASSAVTVPAEVSSLPPKRKERSLSSLAFDTPIVSNQATVTGKRTKNVTRKAAAIRGSSFSIEKPIKIEEDHLNISSSLENSIKFLNNSSQSCSSGEPSQSSEHKEQENCAEQCEAKGDLWKPLNYLVEAANRSKSLKSSSQGCDTKPEARPVNDSEVQGRESKSKVSRRKIKFGDEKIIADRSPYTAKSNKTRRNPQKKEPIAEASISPQAIMYSASGKSDRREGPVWFSLLASENQAGEAPLPQISARYLRIMDGSAFVSYVQKYLRTKLELASEEEVEIRCMGQPVDPALKIHEIVDSWLQSAHRSQRIAVKIGSPAEKYLVVLRYARKVVDH* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g02042 432 MobiDBLite consensus disorder prediction 231 265 - -
Pte6g02042 432 MobiDBLite consensus disorder prediction 279 303 - -
Pte6g02042 432 MobiDBLite consensus disorder prediction 246 265 - -
Pte6g02042 432 SUPERFAMILY RING/U-box 13 76 - -
Pte6g02042 432 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 428 IPR044807 GO:0004842
Pte6g02042 432 MobiDBLite consensus disorder prediction 185 204 - -
Pte6g02042 432 FunFam Polycomb group RING finger protein 3 3 106 - -
Pte6g02042 432 Gene3D - 309 407 - -
Pte6g02042 432 CDD RING-HC_PCGF 17 60 - -
Pte6g02042 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 109 IPR013083 -
Pte6g02042 432 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Pte6g02042 432 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Pte6g02042 432 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Pte6g02042 432 SMART ring_2 19 59 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g02042 Pte-Chr6 36785931 36791357 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g02042 5 350 C3H Transcription Factor Family AT2G30580 46.328 1.86e-88 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g02042 K16277 - cave:132165620 459.144