Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g02006 ATGCCTTCCATGATATCTCCGGGAAAAATTCTCCGTCTAGAAATGGAGAATTTCAAATCCTACAAAGGATTTCAAGTTGTAGGTCCGTTCTACGATTTCACTGCAATTATTGGTCCCAACGGCGCCGGAAAGTCGAACCTTATGGATGCTATTAGCTTTGTACTCGGTGTACAGACTGATAAGTTGCGTGGTGCCCAGTTGAAGGACTTAATTTATGCTTTCGACGACAAGGACAAAGAGCAGAAAGGGCGCAAGGCTTTCGTTCGCTTGGTTTACCAGCTTGATAGCGGGTCGGAGCTCCATTATACTCGGTCCATCAGTAGTTCGGGTGCAAGCGAGTACCGTATCGATGGAAATGTTGTCTCTAGAGATGCTTATAATGCTAGCCTCAAGTCGCTTGGAATTCTGGTCAAGGCTCGCAATTTTTTGGTGTTCCAGGGTGATGTGGAGTCTATTGCATCTAAAACCCCCAAAGAGCTTACTCAGCTTTTGGAGCAAATATCAGGCTCCGATGAACTCAAAAGAGACTATGCTCAATTTGAAGAAGAAAAGGCTAAAGCTGAAGAAGAATCTGCACATATTTATCGAAAGAAAAAGACTATAGTAATGGAGAGGAAGCAGAAGAAAGCGCAGAAAGAAGAGGCTGAGAAACATATTCGCTTACAAGAAGAACTGAAATCTCTGAAGAGGGAGCACTTTTTATGGCAACTGTTTAATATAGAAAAGGATGTAGAAAAGTCTACCGAGGACCTTGAGGATGAAAAAAGAAGCCGAGAGGGCGTAATGCAAGAACTAGAAACTTTTGAGCATGAAGCAAGTAAAAAGAAGAAAGAGCAAGCAAAATATCTGAAAGAGATTGCTCAGTGTGAGAAGAAGATTGGCGAACGAAGCAACAGACTTGACAAGAATCAACCTCAGCTGTTGAAGTTGAAAGAAGAAATGACTCGCATAAATTCAAAAATAAAGAAAAATCGCAAAGAGCTTGACAAAAGAAAGGAAGAAAGAAAGAGGCATGGTGCTGATATTGCAGAGTTAAAGAAAGGGATAAGGGATCTTTCTGCAAAAATGGAGGATTTACAAGAAAAAGGTCGAGAGAGTGGTGAAATGCTACAATATAATGACGAGCAATTTGAAGAATATTGTAAAATTAAAGAGAAAGCTGCAATGAAGACTGTGAAGCTTAGAGATGAGAAAGAGGTTCTGGATAGGCAACAACATGCTGATACTGAAGCTGAAAAGAATTTGGAAGAGAACCTTCAACAGTTGACAAATAGGGAGCGTGAACTCGAGTCACAGGAGGAACATATGAAAACAAGACTGAAAAAAATTCTTGATAATTCTACAAAGCACAAGAATGACCTTGCAAGACTGAAAAAGGAATTGCGAATGATGCAAGACAAACATCGGGATGCCAAGTCAAAATATGAAAACCTGAAGTCAAGAATTGGCGAACTTGAAAACCAGCTACGTGAATTGAAGGCTGACAGATACGATAATGAGAGGGATGCCAGACTGTCTGAGGCAGTGGAGACCCTTAAGCGTCTTTTTCAAGGAGTCCATGGCCGTGTCACTGATCTTTGTCGACCTACACAGAAGAAGTACAATCTAGCTGTTACAGTGGCTATGGGGAAATTTATGGACGCAGTAGTTGTTGAAGATGAAAAAACTGGAAAGGAGTGTATTAAGTACTTGAAAGAGCAGAGGCTTCCTCCTCAGACATTCATACCTCTACAATCAGTTCGAGTCAAACCAGTAATTGAAAGATTGCGCACACTTGGTGGTACTGCAAAGCTGGTCTATGATGTAATTCAATATCCTTTCGTACCATCAGCAGCAGCCTCCTGA 1845 0.4125 MPSMISPGKILRLEMENFKSYKGFQVVGPFYDFTAIIGPNGAGKSNLMDAISFVLGVQTDKLRGAQLKDLIYAFDDKDKEQKGRKAFVRLVYQLDSGSELHYTRSISSSGASEYRIDGNVVSRDAYNASLKSLGILVKARNFLVFQGDVESIASKTPKELTQLLEQISGSDELKRDYAQFEEEKAKAEEESAHIYRKKKTIVMERKQKKAQKEEAEKHIRLQEELKSLKREHFLWQLFNIEKDVEKSTEDLEDEKRSREGVMQELETFEHEASKKKKEQAKYLKEIAQCEKKIGERSNRLDKNQPQLLKLKEEMTRINSKIKKNRKELDKRKEERKRHGADIAELKKGIRDLSAKMEDLQEKGRESGEMLQYNDEQFEEYCKIKEKAAMKTVKLRDEKEVLDRQQHADTEAEKNLEENLQQLTNRERELESQEEHMKTRLKKILDNSTKHKNDLARLKKELRMMQDKHRDAKSKYENLKSRIGELENQLRELKADRYDNERDARLSEAVETLKRLFQGVHGRVTDLCRPTQKKYNLAVTVAMGKFMDAVVVEDEKTGKECIKYLKEQRLPPQTFIPLQSVRVKPVIERLRTLGGTAKLVYDVIQYPFVPSAAAS* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g02006 614 SMART SMC_hinge_2 517 599 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Pte6g02006 614 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Pte6g02006 614 FunFam Structural maintenance of chromosomes 1A 9 224 - -
Pte6g02006 614 Coils Coil 170 197 - -
Pte6g02006 614 Gene3D - 452 593 - -
Pte6g02006 614 Coils Coil 342 362 - -
Pte6g02006 614 Coils Coil 205 231 - -
Pte6g02006 614 Pfam SMC proteins Flexible Hinge Domain 517 606 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Pte6g02006 614 Pfam RecF/RecN/SMC N terminal domain 10 138 IPR003395 -
Pte6g02006 614 Gene3D - 8 222 IPR027417 -
Pte6g02006 614 Coils Coil 307 334 - -
Pte6g02006 614 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 10 606 - -
Pte6g02006 614 Coils Coil 405 502 - -
Pte6g02006 614 SUPERFAMILY Smc hinge domain 478 606 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Pte6g02006 614 Coils Coil 251 292 - -
Pte6g02006 614 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 210 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g02006 7 335 Structural Maintenance of Chromosomes family AT5G15920 23.263 1.01e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g02006 K06636 - zju:107425772 942.184