Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g02003 ATGCAACGAGGTCAGATGGATACAACAGCAGCAAAATGTCTTGTCAACAGTATATCTCGTTTTGTTCATCTCGTATCTTGCAGTTCCATAAAGCTTACACAGATACAGAAGAACTACGATCGTGTAGCTGGGCTGTTAAAGCATTTGAAAACTGTAATTGATGAAGTTATTGATTACAGATTCCCTTATGATGAAAATCTATCTAAAGAGTGTGAAGAGCTTGACATGGCAGTTAATGAGGCTAGGGAGTTTGCTGAACACTGGTCTCAAAAAAGTAGCAAGATTCACAGTCTCATGAGGAATGGACAGCTGTTGAATAGAGTCCGAAACTCTTCATTCGAGATTTGTCGTGTACTATATAAATCCCTAGAGTCATCTTCGTCTTCTGGATTAAGTGATGTTCAGAACTGTATGCAGGAAATCAACTGTTTGAAATTGGAACAACTAACAGTTGATATTGAAGAGTCTCTAAGAAGTCAAAGAGAAAACATTGAGTCCCATGAACATATAATTAAAATCATCGAACCACTCGGTTTCACAATAAACAGGGAACTTCTCAAAGAGAATATTGCTTTGGAGAAGGAACGTTCGAAAGCTGAGCTGAATAAAATGAAAGGGGAGTTAGATGATATTGATCAAATTCTTGCACTTCTCTGTAATATACGAAATTATAGGATGAGATCAGAGTGCTCTGAGATCAGTACTAGTATCTCGATCCCTGCATACTTCCGCTGTCCTTTGTCTTTGGAACTCATGGTGGATCCTGTAATTGTTGCTTCGGGACAAACCTATGAGAGGACTTCAATCCAGGAATGGCTAGATCATGGCCTAACCATCTGTCCAAAAACTCGTCAGGAGCTTACCCATACAAATCTCATCCCAAATTATACTGTTAAAGCAATGGTAGGAAATTGGTGTGAGGAAAACTGTGTTAGAGTTTCTTCTAAATCTGAGCAAATGATATTTGACTGTGTTACTTACCCATTGGATCAACTTTCAGAGCGAGAATTATTTCGGACACTCAGTATAAAGTCTTCTTTAAGTGGCAGCAATTCTACTTCAAGATCTTCTTTTCAAGCTGGAAATGCCTTTGAGAATCAAAGGTATGACGTGGTTTCTAGGATAAGTGATTTATCTAATGAACACCAAAGTGGGACTAGGGAAAATTTTGAGCAACCATCTCCTGCACCTTCCTTTATTCACAGCAGAAGTGCATCACTGTCAAGTTTGGTCTCTAGCACGAATTATGGAATTCGAGCATCAAATGAAATGTCAAAAACATCTATGAGATGTCAGAATGAATTTTCTGGAGAAATCACATCTGAATCTTTTGACTCCAACCCTCCGACAAATGATGCAAATGATTCTCCTCTGATGTCAGGAAAACAAAGGCAAGTTCCTGATAAAGAGGTTTATGTGTTGGAGAATGGAAATAATAGTCATTCACGAGCACCATCTCTTCCCACGAAGACCTGCTCTGACACGTTAACCTCCACATCGCACGTCAAAAAATTGATTGAAGATCTCAATAGCCAATCAAATGATGTGCAAACTATTGCTGCAGAAGAATTGAGGTTACTTGCAAAGCACAACATGGAAAACCGTATTATAATTGGTGAGTGTGGGGCCATCACACCATTGCTCCCACTTCTATATTCTAATCTGAAGCTTACACAAGAGCATGCCGTGACAGCCCTTCTAAATCTATCCATTTGTGAGGACAATAAGGCATTGATTGTAGAAGCAGGAGCCATAGAAGCATTTATATATGTTTTGAAAACAGGAAGTGATGGAGCCAAAGAGAACTCTGCTGCTGCTCTATACAGTCTGTCTGCACTAGAAAAATATAAAGACAAAATTGGTCGTTCTGGGGCAATCAAAGCCTTGGTAGACCTTTTAAGTTCTGGGACACTCAGAGGAAAAAAAGATGCTGCAACTGCTTTATTTAATTTATCAATATTTCATGAAAATAAAGCTCGTATAGTTCAAGCTGGAGCTGTAAAGTATCTTGTTCAGTTGCTGGATCCCGCTACTGGAATGGTTGACAAAGCTGTTGCCCTGCTGGCTAATCTATCGTCAATCGGAGAGGGCCGCTTAGCAATTGCTCGGGAAGAAGGCATTCCATTATTAGTTGAAATTGTTGAATCCGGTTCACTGAGGGGAAAAGAAAATGCTGCATCTGTACTGTTGCAGCTTTGCCTTTATAGTCCCAAACACTGCACCCTGGTTTTACAAGAAGGGGCTGTCCCTCCGCTAGTTGCATTATCTCAATCAGGCACACCAAGAGCAAGAGACAAGGCTCAACAGCTCCTCAGTCATTTCCGAAATCAGCGAGGAGGTGCAGTAGGGAAGGGGAAATCTTCATAA 2367 0.4026 MQRGQMDTTAAKCLVNSISRFVHLVSCSSIKLTQIQKNYDRVAGLLKHLKTVIDEVIDYRFPYDENLSKECEELDMAVNEAREFAEHWSQKSSKIHSLMRNGQLLNRVRNSSFEICRVLYKSLESSSSSGLSDVQNCMQEINCLKLEQLTVDIEESLRSQRENIESHEHIIKIIEPLGFTINRELLKENIALEKERSKAELNKMKGELDDIDQILALLCNIRNYRMRSECSEISTSISIPAYFRCPLSLELMVDPVIVASGQTYERTSIQEWLDHGLTICPKTRQELTHTNLIPNYTVKAMVGNWCEENCVRVSSKSEQMIFDCVTYPLDQLSERELFRTLSIKSSLSGSNSTSRSSFQAGNAFENQRYDVVSRISDLSNEHQSGTRENFEQPSPAPSFIHSRSASLSSLVSSTNYGIRASNEMSKTSMRCQNEFSGEITSESFDSNPPTNDANDSPLMSGKQRQVPDKEVYVLENGNNSHSRAPSLPTKTCSDTLTSTSHVKKLIEDLNSQSNDVQTIAAEELRLLAKHNMENRIIIGECGAITPLLPLLYSNLKLTQEHAVTALLNLSICEDNKALIVEAGAIEAFIYVLKTGSDGAKENSAAALYSLSALEKYKDKIGRSGAIKALVDLLSSGTLRGKKDAATALFNLSIFHENKARIVQAGAVKYLVQLLDPATGMVDKAVALLANLSSIGEGRLAIAREEGIPLLVEIVESGSLRGKENAASVLLQLCLYSPKHCTLVLQEGAVPPLVALSQSGTPRARDKAQQLLSHFRNQRGGAVGKGKSS* 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g02003 788 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 665 706 IPR000225 GO:0005515
Pte6g02003 788 FunFam RING-type E3 ubiquitin transferase 487 780 - -
Pte6g02003 788 Pfam U-box domain 239 309 IPR003613 GO:0004842|GO:0016567
Pte6g02003 788 Gene3D - 618 700 IPR011989 -
Pte6g02003 788 Gene3D - 497 617 IPR011989 -
Pte6g02003 788 ProSiteProfiles U-box domain profile. 238 312 IPR003613 GO:0004842|GO:0016567
Pte6g02003 788 Coils Coil 182 214 - -
Pte6g02003 788 CDD RING-Ubox_PUB 240 292 IPR045210 -
Pte6g02003 788 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 584 IPR000225 GO:0005515
Pte6g02003 788 SUPERFAMILY RING/U-box 236 310 - -
Pte6g02003 788 SUPERFAMILY ARM repeat 497 774 IPR016024 -
Pte6g02003 788 Pfam Armadillo/beta-catenin-like repeat 616 652 IPR000225 GO:0005515
Pte6g02003 788 Pfam Armadillo/beta-catenin-like repeat 573 612 IPR000225 GO:0005515
Pte6g02003 788 Pfam Armadillo/beta-catenin-like repeat 533 570 IPR000225 GO:0005515
Pte6g02003 788 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 624 666 IPR000225 GO:0005515
Pte6g02003 788 PANTHER U BOX DOMAIN-CONTAINING 36 774 - -
Pte6g02003 788 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 313 IPR013083 -
Pte6g02003 788 SMART arm_5 736 776 IPR000225 GO:0005515
Pte6g02003 788 SMART arm_5 531 571 IPR000225 GO:0005515
Pte6g02003 788 SMART arm_5 572 612 IPR000225 GO:0005515
Pte6g02003 788 SMART arm_5 695 734 IPR000225 GO:0005515
Pte6g02003 788 SMART arm_5 613 653 IPR000225 GO:0005515
Pte6g02003 788 SMART arm_5 654 693 IPR000225 GO:0005515
Pte6g02003 788 SMART Ubox_2 242 305 IPR003613 GO:0004842|GO:0016567
Pte6g02003 788 MobiDBLite consensus disorder prediction 378 402 - -
Pte6g02003 788 MobiDBLite consensus disorder prediction 439 464 - -
Pte6g02003 788 Gene3D - 701 774 IPR011989 -
Pte6g02003 788 MobiDBLite consensus disorder prediction 439 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g02003 Pte-Chr6 36515206 36519850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g02003 6 787 U-box Gene Family AT3G54790 51.511 0.0 680
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g02003 - - qlo:115959783 903.664