Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g02000 ATGGGGCTGAGAGATATTGGAACCACACTGCCTCCTGGCTTTCGTTTTTTCCCCAGTGATGAGGAATTGGTGTGCTATTACCTCTACAAGAAAATCACCAATGAAGAGGTTCTGAAAAATACTTTAGTTGAAATTGACTTGCATACATGCGAGCCATGGCAGCTTCCAGAGGTGGCAAAGTTAAATGCAAATGAATGGTACTTCTTCAGCTTCCGAGACCGCAAATACGCCACAGGTTTTCGGACCAACCGAGCAACCATCTCCGGATATTGGAAAGCTACAGGGAAAGACCGTATTGTGCTGGACCCAGTTACTCGTGAAGTTGTAGGGATGAGGAAGACATTGGTCTTCTATAGAAACAGAGCTCCCAATGGTATCAAGAGTGGTTGGATTATGCATGAGTTTCGATTGGAAACCCCACATATGCCTCCCAAGGAGGACTGGGTATTATGTAGAGTATTTCACAAAAGCAAGAGTACTGAAAACCATAATGCTACACTTAGCCCACACATGATGGAGGCAGCAGACTATTGCGATCCGTCTTTTAACTTTTCTTCTTCTCCAAGCAATCGAACTGGTCATTTACCTTGTGGGTATAACCAAACTACAATTTTATCGTCAACAGGAGCGACCTGTAATCAAAACTACAACCAATGCAATTCTTTTTTAGACCTTCTTCACTTTTCTAGGGAAACTAATCATGAAGACAGTACCACCACTCAAATTAGTCCCCAAGATGATGAATATGGACTCTTATGGGATATGGATTTGGAAGAAAACAAGTTGGATAAAGGTGTGGCGTCCAACTTTGAAGACATGAGATTCGACATAGATCATAACAGTCCGGTCTTCATATGA 858 0.4242 MGLRDIGTTLPPGFRFFPSDEELVCYYLYKKITNEEVLKNTLVEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATISGYWKATGKDRIVLDPVTREVVGMRKTLVFYRNRAPNGIKSGWIMHEFRLETPHMPPKEDWVLCRVFHKSKSTENHNATLSPHMMEAADYCDPSFNFSSSPSNRTGHLPCGYNQTTILSSTGATCNQNYNQCNSFLDLLHFSRETNHEDSTTTQISPQDDEYGLLWDMDLEENKLDKGVASNFEDMRFDIDHNSPVFI* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g02000 285 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 217 - -
Pte6g02000 285 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Pte6g02000 285 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Pte6g02000 285 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
Pte6g02000 285 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g02000 Pte-Chr6 36499548 36503094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g02000 6 200 NAC Transcription Factor Family AT1G56010 47.321 3.08e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte6g02000 NAM 8.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g02000 - - qsa:O6P43_006888 425.246