Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01993 ATGGTCCCTGCAACGTTAAACATGATTCCAACCCAAGAACATTACCACTGGGACTATCCTCCTGGTGGATTCTCAGCCCCAGTGTCTTCTGTCCAATTTCAAAATAAGCCAGTAAATTACATGAACCTTGGACGTAACGATCTCTCAGATTGGGTTGAGAACATTACCAAGCAAATTGTTGATGACATACCAGAGTCCAACGTCGACAATAACCTCCTGCTGCACTCTGGGAACCCCGCCATGGTTTCTCATGATCATAAGTACTATGTCTCAAACAACAACACTAGTCCAACAAAGCCTGCATGGAGACATCAGCTTGATACCAACGGTAACGACATTATTCAGTTTAACAACGATCAGCTCAGTACTGAACCAACCACTTCAGATGCCAACAGCAACCAGGGTTTGACCCTAATTACCTTACTAATGGAAAGTGCAGTTGCCATTTCTGTCGACAACCTAGGTGAAGCTCACAGGATGCTTCTTGAGCTGACACAAATGGCTTCACCTTATGGACCCTCTTGTGCAGAGCGTGTGGTTGCTTATTTTGCTAAGGCCATGGCTAGCAGAGTTATCAACTCATGGATTGGGATATGTTCGCCTTTGGTTAACTACAAAAGTCTTCACAACGCTTTCCATGTTTTCAACAACATCTCCCCTTTCATCAAGTTTGCTCATTTCACTTCAAACCAAGCCATTCTAGAAGCAGTGCACCGCCGTGAGAGGATTCACATTGTTGATCTAGATATCATGCAAGGACTGCAATGGCCAAGTTTGTTTCACATCCTAGCAAACCGTATAGAGGGTACACCTCATGTGAGAATGACAGGTATGGGGACTTCAATGGAGCTTTTGTTAGAGACAGGAAAGCAACTCTCCAATTTTGCTAGGAGGCTCGGACTCTCATATGAGTTCCATCCGATTGCAAGAAAATTTGGAGAGGTCGATGCTTCCATGGTGCAAGTGAGGCGTGGCGAAACTCTTGCTGTGCATTGGTTGCAACACTCACTGTATGATGCAACTGGCCCTGACTGGAAAACACTGAGATTGCTAGAGCAATTGGAACCAAGAATCATCACTTTCGTTGAGCAAGATGTGTCACATGGTGGCTCATTCTTAGACCGTTTTGTTGGGTCTCTGCACTATTATTCTACCCTCTTTGATTCTTTTGGAGATCATTTGACTCCTGATGACTTAAACAGACACCATGTTGAGCATTGTCTTCTATACAGAGAGATCCACAATATATTGGCCATAGGAGGACCAGCAAGGAGTGGAGAGGACAAGTTTAGGCATTGGAAGAATGAGCTTGCAAGGCATCGTTTTCTACAGGTTCCAATGAGTGCAAATTCAATGGCTCAGGCACAGTTGATACTGAACATGTTTCCTCCTGTTCATGGATATAGCCTTGTTCAAGCGGATGGGACATTGAGGCTTGGTTGGAAGGATACCAGTTTGTATACAGCCTCTGCATGGACTTGTGGTAATGTTAGGTAA 1497 0.4449 MVPATLNMIPTQEHYHWDYPPGGFSAPVSSVQFQNKPVNYMNLGRNDLSDWVENITKQIVDDIPESNVDNNLLLHSGNPAMVSHDHKYYVSNNNTSPTKPAWRHQLDTNGNDIIQFNNDQLSTEPTTSDANSNQGLTLITLLMESAVAISVDNLGEAHRMLLELTQMASPYGPSCAERVVAYFAKAMASRVINSWIGICSPLVNYKSLHNAFHVFNNISPFIKFAHFTSNQAILEAVHRRERIHIVDLDIMQGLQWPSLFHILANRIEGTPHVRMTGMGTSMELLLETGKQLSNFARRLGLSYEFHPIARKFGEVDASMVQVRRGETLAVHWLQHSLYDATGPDWKTLRLLEQLEPRIITFVEQDVSHGGSFLDRFVGSLHYYSTLFDSFGDHLTPDDLNRHHVEHCLLYREIHNILAIGGPARSGEDKFRHWKNELARHRFLQVPMSANSMAQAQLILNMFPPVHGYSLVQADGTLRLGWKDTSLYTASAWTCGNVR* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01993 498 ProSiteProfiles GRAS family profile. 129 493 IPR005202 -
Pte6g01993 498 Pfam GRAS domain family 138 493 IPR005202 -
Pte6g01993 498 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 120 489 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01993 Pte-Chr6 36446845 36448341 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01993 134 493 GRAS Transcription Factor Family AT3G54220 54.768 1.20e-136 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pte6g01993 GRAS 6.9e-103 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01993 - - pvy:116143161 711.064