Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01986 ATGGAGTCGGATGAAGGGAAGCTATTCATAGGAGGGGTGGCATGGGACACAACAGAAGACAGTCTGCTAAGTCACTTCGCCCCGTACGGTGAGGTTTCTGAGGCTGTGATAGTACGAGACAAAATCACTCAGCGACCTAGAGGCTTCGCTTTCGTCATTTTCTCCGACTCTTCTGTTCTTGACAGGGTTCTTCAAGAGTCTCATACCATCGATGGCCGCACTGTAGAGGTTAAAAGGGCTTTGTCAAGGGAGGAACAGCATTCCTTTTCTCGAAATGGGAATTCTTTTGCTAGTAGGAGTTCAGGAGAGGGAGGAAGTTATAAGACAAAGAAGATTTTTGTTGGGGGATTGCCTTCCACTCTGACTGAAGATATCTTTCGTCAGTATTTTGAGAATTATGGCCGTGTAACTGATGTAGTTATTATGTATGACCAGAATACTCAACGAACTCGTGGTTTTGGTTTTATAACATTTGAATCTGAAGATGCTGTTGATAGAGTTTTACACAAGACTTTTCATGACTTAGATGGTAAATCTGTAGAGGTGAAACGGGCATTACCAAAAGATGCCAATCCAGGAGGCAGTAGCCGTTTTGGTGGGCATCAAGGTTACAATGGTTCTGACGTCAATACTAATACATTTGATAGCCATGTGGATAGAAATAAATATATACAGCCTCAAAATACTGCTGGCGGATTTCCACCTTATCCTGCCTACATGGCACCAAGTTTTGGTTATGGGGCTTACGGAAGCTATGGTGTTGGTGGTTATGGAAGTGCCAACAGTGGCTTTGGGGGTCAGGCAGGGGCTTATGGAAATCCAAATGTCCAGAATGCTGGCTTTATTGGTGGAGCTCCTGGTGCGTTAAAAAATGCTTGGAGCAACCCAGTTTCAGGATATGGTGCTTCTGGTTATGGATATACAGCTCCTTGGACAGGCAGTGGTGCTGCCATTTCTGCACCAAGGGGACAATCGGGATATCCCACCTATCAGAGTCATGGTTATGGTTATGGATATGGTAGTAATGTAGGTAGTGACGGTTCTTTTTCAACTGGTCGTCCTGATAATACTGCTGCTGGGATTAGTGGAGGGGAGCAACAAGAATATAGCAGTGGATATGCTGACACCCATGGGAAATCAGGGTACGCCAGTGACTATCCCTCACAAGCAACTGGTAATTATGGTGGTGGATATAATGCTAGGAGGTCTTGA 1212 0.4497 MESDEGKLFIGGVAWDTTEDSLLSHFAPYGEVSEAVIVRDKITQRPRGFAFVIFSDSSVLDRVLQESHTIDGRTVEVKRALSREEQHSFSRNGNSFASRSSGEGGSYKTKKIFVGGLPSTLTEDIFRQYFENYGRVTDVVIMYDQNTQRTRGFGFITFESEDAVDRVLHKTFHDLDGKSVEVKRALPKDANPGGSSRFGGHQGYNGSDVNTNTFDSHVDRNKYIQPQNTAGGFPPYPAYMAPSFGYGAYGSYGVGGYGSANSGFGGQAGAYGNPNVQNAGFIGGAPGALKNAWSNPVSGYGASGYGYTAPWTGSGAAISAPRGQSGYPTYQSHGYGYGYGSNVGSDGSFSTGRPDNTAAGISGGEQQEYSSGYADTHGKSGYASDYPSQATGNYGGGYNARRS* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01986 403 MobiDBLite consensus disorder prediction 346 374 - -
Pte6g01986 403 MobiDBLite consensus disorder prediction 198 212 - -
Pte6g01986 403 FunFam heterogeneous nuclear ribonucleoprotein 1 105 217 - -
Pte6g01986 403 MobiDBLite consensus disorder prediction 346 403 - -
Pte6g01986 403 MobiDBLite consensus disorder prediction 184 212 - -
Pte6g01986 403 SUPERFAMILY RNA-binding domain, RBD 108 208 IPR035979 GO:0003676
Pte6g01986 403 Gene3D - 109 189 IPR012677 -
Pte6g01986 403 CDD RRM2_Hrp1p 111 188 - -
Pte6g01986 403 Gene3D - 4 88 IPR012677 -
Pte6g01986 403 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 399 - -
Pte6g01986 403 SMART rrm1_1 111 183 IPR000504 GO:0003723
Pte6g01986 403 SMART rrm1_1 7 78 IPR000504 GO:0003723
Pte6g01986 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 187 IPR000504 GO:0003723
Pte6g01986 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Pte6g01986 403 MobiDBLite consensus disorder prediction 83 106 - -
Pte6g01986 403 MobiDBLite consensus disorder prediction 382 396 - -
Pte6g01986 403 SUPERFAMILY RNA-binding domain, RBD 3 105 IPR035979 GO:0003676
Pte6g01986 403 MobiDBLite consensus disorder prediction 87 105 - -
Pte6g01986 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Pte6g01986 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 169 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01986 Pte-Chr6 36383019 36386545 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01986 8 173 Eukaryotic Initiation Factors Gene Family AT2G36660 28.488 4.49e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01986 K14411 - qsa:O6P43_010473 508.064