Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01984 ATGTATGAACTATTGTCTCAGCTCTTCAAGTTTAGTCTGTTCCTCCAGAGAGTAAACAGCACCGTATTGGCTGCATCAGGGGGTTTAAGTTCGGAGCAGATGGTAACCAAGACGAGCAGCATGTATAGATTAGATGGTTTTGCATGTTCACTATTATATTCTGTATTCACAGTATCTGCAGTTACATTTTTCTTCAAAGATCAGTCTGAGGTGATACAAGAACCTGGAACAAAATTTGAGAGTCCCAGCATTCACAACCAGTTTGGCCCCGTGCTTAGCTTGGCCATTTTATCAGTGTTTGCCATGACCTCAAACACCATGGCTGGCTTAGTCACTGGTGCTGATACCCGAGATGAGCTCCACTTTTCACGTGGTAATGACGAGCACCGTATTCCTACAAGCCAATCTGGAAGAATATGTAGAGTTTGTGGAGATGAGATTCAATACGGAGAAGATGGACAAATGTTTGTGGCTTGTCATGTTTGTGGCTTTCCTGTTTGTCGTCCATGTTATGATTATGAAAGAAGTGAAGGAAACCAGTGCTGTCCACAATGCAATACTCGCTATAAGCGTCACAGAGGTTGTCCTAGAGTCAATGGAGATGAAGATGACGACTATGATGCAGATGACTTCGATAATGAATTTCAAATTAAGAGGCAAGAAGATGATGACTCAGATCACCAAGCCTCCTTGAATCATATAGAGAGTGGCGAACATAATCAACAACGATGGCATCCTAACGGCCCGCCTTTCTCTTCTGCAGGAAGTGTTACTGGAAAGGATTTTGAAGGTGAAAAAGAAGGTTACAGCAACGCAGAATGGAAAGAAAGAGTAGAGAAATGGAAAGTCAGGCAAGAAAAGAGAGGTTTGATCAGCAAAGATGACGAAAAGGATGATCAAGGTGAAGACGACGATTATCTTTTAGCAGAAGCAAGGCAACCATTGTGGAGAAAAGTACCAATATCTTCAAGCCTTATTAACCCATACCGCATTGTCATTGTCTTGCGGCTCGTCATTCTCATATTCTTCTTCCGTTTTCGTATCTTAACACCAGCATATGATGCATACCCCTTATGGCTTATCTCTGTAATCTGTGAAATATGGTTTGCAATGTCTTGGATACTTGACCAATTCCCAAAATGGTTCCCGATAAGTCGTGAAACTTATTTAGACCGCCTGTCCTTGAGGTTTGAGCGTGAGGGCGAGCCTAACCGTCTATCCCCAGTAGATTTCTTTGTGAGTACTGTGGATCCTTTGAAGGAACCACCTATAATAACTGCAAACACTGTTCTATCAATCCTGGCTGTTGATTACCCTGTTGATAAGGTCAGCTGCTATGTATCAGATGATGGTGCATCTATGCTACTTTTTGATGCATTGTCTGAAACTGCTGAATTTGCAAGACGATGGGTTCCATTTTGCAAGAAGCACAACATTGAACCAAGGACACCTGAATTCTACTTCTCTCAAAAGATTGATTATCTTAAAGATAAGGTGCATCCTAACTTTGTCAAGGAGCGCAGGGCCATGAAAAGAGAGTATGAAGAATTTAAGGTGAAAATTAATGCATTGGTAGCAAAGGCTCAGAAGAAACCAGAAGAAGGGTGGGTGATGCAGGATGGTACACCATGGCCAGGAAACAACACTCGAGATCATCCCGGCATGATTCAGGTTTACTTGGGGAAAGATGGTGCGCTTGATGTTGAAGGAAAGGAATTGCCAAAGCTTGTGTATGTTTCACGAGAAAAGCGCCCAGGGTATCAGCACCACAAGAAAGCTGGTGCCATGAATGCTTTAGTTCGAGTTTCTGCAGTGCTTACCAATGCACCATTTATTCTGAATCTCGATTGTGACCATTATGTCAACAACAGCAAGGCTGTAAGGGAAGCGATGTGTTTTCTGATGGATCCACAACTTGGGAAGAAACTCTGCTATGTTCAATTTCCACAAAGGTTTGACGGCATTGATCATCATGATCGATACGCTAATCGCAATGTTGTCTTCTTTGATATCAACATGAAAGGGCTTGATGGAATTCAAGGCCCAGTATATGTCGGTACTGGGTGTGTCTTTAACCGGCAGGCCTTGTATGGCTATGATCCTCCAATATCAGAGAAGCGACCAAAGATGACCTGTGACTGCTGGCCTTCATGGTGCTGCTGCTGCTGCGGTGGCTCGAGGAAATCCAAGTCAAAGAAGAAAACAGGGAAGGGTTTCTTCAGTAGATTCTACACCAAGAACAAGAAAATGATGGGGAAGAAGAACTACATGAGGAAAGGATCTGCTTCGATGTTTGACCTTGAAGAGATTGAAGAAGGACTAGAAGGCTACGACGAACTGGAGAAATCATCACTAATGTCACAGAAAAATTTCGAGAAGCGGTTTGGACAGTCGCCAGTTTTTATTGCTTCCACTTTGATGGAAGATGGTGGACTTCCGGAAGGGACCAGCAGCTCAACTCTTGTCAAGGAAGCCATTCATGTAATAAGCTGTGGATATGAAGAGAAAACTGATTGGGGAAAAGAGATTGGTTGGATTTACGGTTCAGTGACGGAAGATATCTTGAGTGGATTTAAAATGCATTGTAGAGGATGGAAGTCAATCTACTGCATACCAAAGAGAGATGCTTTCAAGGGATCTGCTCCGATTAATCTATCAGATCGGTTGCACCAAGTTCTGCGATGGGCTCTTGGTTCCGTTGAGATTTTCCTTAGTCGCCATTGCCCATTATGGTATGGTTATGGTGGCAAATTGAAATGGCTCGAGAGACTAGCTTACATTAACACCATAGTTTATCCTTTCACTTCAATCCCTCTACTAGCATATTGCACCATCCCAGCTGTTTGTCTCCTGACTGGAAAATTCATCATCCCCACTTTGACAAACTTTGCAAGCATATGGTTCATGGCTCTTTTCATCTCCATTATCTTAACTAGTGTGCTAGAGATAAGATGGAGTGGAGTTAGCATTCAAGATTTATGGAGAAACGAGCAATTCTGGGTGATTGGTGGTGTTTCTGCACACCTTTTTGCTGTCTTCCAAGGTCTACTAAAGGTTCTTGCTGGAGTTGATACCAACTTTACTGTGACAGCAAAAGCTGCAGAAGACACAGAATTTGGAGAGCTCTATCTCTTCAAATGGACTACACTTCTCATCCCACCAACCACTTTGATAATTCTGAATATGGTGGGAGTTGTGGCTGGCGTTTCTGATGCCATTAACAATGGATATGGCTCATGGGGACCTCTATTTGGCAAGCTCTTTTTTGCCTTCTGGGTCATTGTTCATCTGTATCCTTTCCTCAAAGGTCTAATGGGAAGGCAAAACAGGACCCCGACCATTGTAGTTCTCTGGTCAATACTTCTAGCTTCGATTTTCTCTCTCATTTGGGTTAGAATCGATCCCTTCTTGCCCAAGCAAACCGGCCCAATACTCAAACAGTGCGGGGTAGAGTGTTAG 3459 0.431 MYELLSQLFKFSLFLQRVNSTVLAASGGLSSEQMVTKTSSMYRLDGFACSLLYSVFTVSAVTFFFKDQSEVIQEPGTKFESPSIHNQFGPVLSLAILSVFAMTSNTMAGLVTGADTRDELHFSRGNDEHRIPTSQSGRICRVCGDEIQYGEDGQMFVACHVCGFPVCRPCYDYERSEGNQCCPQCNTRYKRHRGCPRVNGDEDDDYDADDFDNEFQIKRQEDDDSDHQASLNHIESGEHNQQRWHPNGPPFSSAGSVTGKDFEGEKEGYSNAEWKERVEKWKVRQEKRGLISKDDEKDDQGEDDDYLLAEARQPLWRKVPISSSLINPYRIVIVLRLVILIFFFRFRILTPAYDAYPLWLISVICEIWFAMSWILDQFPKWFPISRETYLDRLSLRFEREGEPNRLSPVDFFVSTVDPLKEPPIITANTVLSILAVDYPVDKVSCYVSDDGASMLLFDALSETAEFARRWVPFCKKHNIEPRTPEFYFSQKIDYLKDKVHPNFVKERRAMKREYEEFKVKINALVAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGKDGALDVEGKELPKLVYVSREKRPGYQHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYVNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDHHDRYANRNVVFFDINMKGLDGIQGPVYVGTGCVFNRQALYGYDPPISEKRPKMTCDCWPSWCCCCCGGSRKSKSKKKTGKGFFSRFYTKNKKMMGKKNYMRKGSASMFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLMEDGGLPEGTSSSTLVKEAIHVISCGYEEKTDWGKEIGWIYGSVTEDILSGFKMHCRGWKSIYCIPKRDAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNFASIWFMALFISIILTSVLEIRWSGVSIQDLWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTAKAAEDTEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLIWVRIDPFLPKQTGPILKQCGVEC* 1153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01984 1152 CDD mRING-HC-C4C4_CesA 139 188 - -
Pte6g01984 1152 Coils Coil 507 527 - -
Pte6g01984 1152 SUPERFAMILY Nucleotide-diphospho-sugar transferases 422 969 IPR029044 -
Pte6g01984 1152 MobiDBLite consensus disorder prediction 237 265 - -
Pte6g01984 1152 SUPERFAMILY RING/U-box 130 209 - -
Pte6g01984 1152 FunFam Cellulose synthase 526 700 - -
Pte6g01984 1152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 214 IPR013083 -
Pte6g01984 1152 Pfam Cellulose synthase 409 1145 IPR005150 GO:0016020|GO:0016760|GO:0030244
Pte6g01984 1152 Pfam Zinc-binding RING-finger 135 205 IPR027934 -
Pte6g01984 1152 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 312 1119 - -
Pte6g01984 1152 MobiDBLite consensus disorder prediction 237 254 - -
Pte6g01984 1152 FunFam Cellulose synthase 124 214 - -
Pte6g01984 1152 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 520 701 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01984 Pte-Chr6 36365264 36371268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01984 108 1153 Cell Wall Biosynthesis AT5G17420 66.081 0.0 1437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01984 K10999 - qsa:O6P43_006855 1867.82