Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01983 ATGTCCGGCTACAGGGACGCAGACACACTCACTTCCTTGACGTCGGATACTAGATTAATCCTACGGCTGCCGCTCGTTTCTCACTCAGACGCACGCTCAGTTTCAGAGGCACGTTCGGACTCGCAACAAGCTTCCTTCGACCTCTCTAATACTCACAGACCCTCCTTTGATTTCTCCGTCGCAAGCCCTAGCTGCTTCTCTATCCTCTCTCCCAGCCACATCAGTGTCAACCCAGCCCCAGAAACCAGAGCTCTACCCAGCTATCAAGACGCTCCATCCCTCTCTTCTCCAAGACACGACTCAACTAACGCCAAGACTCCCAGAACTTCCTTCGACCTCTCCATCGCAAGACCCAGCTGCTCCTTCAACCTCTCTCCCAGACACATCAGTTACGACCCGACCCCAGAAACCAGAGCTCCACCAAGCTCCTTGTCAGACCCAGCTTCCTTTGACCAGTCAGCTCCGTTTTATAACGAGCAGAACAAAAGTAGAGGGCAGGTCACATTCTTAAAAAGACAAAATGGGTTGCTTAAAAAGGCTCAGGAATTGGCTATTCTATATGATGTTGATGCTGCTGTCATCATCTTCTCTAATACTTCTGGCAAGCTTTTTGAGTTTTTGAGTTGTGGGTATGCATCAGTTTGGCTTTTCTGA 654 0.4969 MSGYRDADTLTSLTSDTRLILRLPLVSHSDARSVSEARSDSQQASFDLSNTHRPSFDFSVASPSCFSILSPSHISVNPAPETRALPSYQDAPSLSSPRHDSTNAKTPRTSFDLSIARPSCSFNLSPRHISYDPTPETRAPPSSLSDPASFDQSAPFYNEQNKSRGQVTFLKRQNGLLKKAQELAILYDVDAAVIIFSNTSGKLFEFLSCGYASVWLF* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01983 217 SMART madsneu2 160 209 IPR002100 GO:0003677|GO:0046983
Pte6g01983 217 MobiDBLite consensus disorder prediction 80 109 - -
Pte6g01983 217 MobiDBLite consensus disorder prediction 130 150 - -
Pte6g01983 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 160 206 IPR002100 GO:0003677|GO:0046983
Pte6g01983 217 SUPERFAMILY SRF-like 160 211 IPR036879 GO:0003677|GO:0046983
Pte6g01983 217 ProSiteProfiles MADS-box domain profile. 160 210 IPR002100 GO:0003677|GO:0046983
Pte6g01983 217 PANTHER SERUM RESPONSE FACTOR HOMOLOG 160 207 - -
Pte6g01983 217 Gene3D - 161 215 IPR036879 GO:0003677|GO:0046983
Pte6g01983 217 MobiDBLite consensus disorder prediction 88 109 - -
Pte6g01983 217 PRINTS MADS domain signature 186 207 IPR002100 GO:0003677|GO:0046983
Pte6g01983 217 PRINTS MADS domain signature 171 186 IPR002100 GO:0003677|GO:0046983
Pte6g01983 217 PRINTS MADS domain signature 151 171 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01983 Pte-Chr6 36363944 36364719 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01983 160 208 MADS-box Gene Family AT5G15800 63.265 7.15e-12 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pte6g01983 SRF-TF 6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01983 - - mnt:21391339 69.707