Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01976 ATGTCGACTATGTCAAAAGAGGACAACTTGGTAGTGTCTTCCGAGGATTCTTCTTGCCCTGATGAATCTGAGCTTGAATTGGGTCTTGGCCTGAGCCTTGCTTCTTCTTGCTTGAAGTTTCAGCCAGCTTCTAAGGGTCAATACCCTCGAATTTTGACGGCTAAGGATTTTCCATCTAGGGTTACCTCGTCTGCACCTTCATCATCAACTTCTTCCAGCTCGTCTCATTCTTCTTCATTGAGCAGAGCTAATAATGTCTCAGCTGGAACAAAGAGAGCTGCTGATTCTGTTGCCGGTGCTAACGGTCCCAGTCAGATTGTGGGCTGGCCTCCAATTAGAGCTTATAGAATGAATAGCTTAAATAACAATGCAAAATCATCGACCACTGAAGCATTCAACTCAATGGGTCACAAGATTAAGAGTGAAGATGACGAAACAAGAATGACCAACAGTGACAAAAACAAGAAAAATGGCAAAGACAAAACCAATGTCAGGAGTTCCTACTTTGTTAAAGTCAATATGGATGGATATTCTATTGGAAGAAAAGTTGACATGAGTGCTCATAGTTGCTACGAGACCCTAGCCCAAACTCTAAAAGATATGTTCCATCTGCCTACTGAAGTCATGATTGCTGAAAGATATGATGATCAGGACATGATAGTTGAAGCTAAAAGACAGTCCAAACTGAATGAATCTTCTGAGTTTGTTCTTACTTACGAAGACAAAGATGGAGATTGGATGCTTGCTGGAGATGTTCCGTGGGGGATGTTCATTAACTCAGTGAGGCGGCTTCGAATAATGAGGAATGCCGATGCAAAGGGACTTGCTCCAGGACTAGAAGAGAAGAATAATAGACAAAGAAGCAGGCCTATATGA 876 0.4224 MSTMSKEDNLVVSSEDSSCPDESELELGLGLSLASSCLKFQPASKGQYPRILTAKDFPSRVTSSAPSSSTSSSSSHSSSLSRANNVSAGTKRAADSVAGANGPSQIVGWPPIRAYRMNSLNNNAKSSTTEAFNSMGHKIKSEDDETRMTNSDKNKKNGKDKTNVRSSYFVKVNMDGYSIGRKVDMSAHSCYETLAQTLKDMFHLPTEVMIAERYDDQDMIVEAKRQSKLNESSEFVLTYEDKDGDWMLAGDVPWGMFINSVRRLRIMRNADAKGLAPGLEEKNNRQRSRPI* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01976 291 Pfam AUX/IAA family 63 277 IPR033389 -
Pte6g01976 291 MobiDBLite consensus disorder prediction 58 103 - -
Pte6g01976 291 MobiDBLite consensus disorder prediction 136 162 - -
Pte6g01976 291 FunFam Auxin-responsive protein 162 279 - -
Pte6g01976 291 SUPERFAMILY CAD & PB1 domains 161 267 - -
Pte6g01976 291 MobiDBLite consensus disorder prediction 58 91 - -
Pte6g01976 291 Gene3D - 161 281 - -
Pte6g01976 291 MobiDBLite consensus disorder prediction 1 18 - -
Pte6g01976 291 ProSiteProfiles PB1 domain profile. 167 271 IPR000270 GO:0005515
Pte6g01976 291 MobiDBLite consensus disorder prediction 1 25 - -
Pte6g01976 291 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 24 273 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01976 Pte-Chr6 36312008 36315442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01976 171 277 B3 DNA Binding Superfamily AT1G59750 28.972 2.93e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pte6g01976 AUX_IAA 2.9e-60 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01976 K14484 - qsa:O6P43_010450 293.123