Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01968 ATGGCCCTTTGGATGAACGCGGGTGCAGCGCCTTCCACCGAAGCGGAGACTGCCGACCTTGATGCTATTAGTGCACTCAAGGAATCTGCTGCCATCGAGCTTAAGGAACAAGGCAATGAATATGTCAAGAAGGGTAAAAGCCACTATTCTGATGCTATTGATTGTTACACGAGAGCAATAAATCAGAACATTTTGCCTGACTCAGAGACTTCCGTACTGTATGCAAATAGAGCCCATGTTAATCTCTTGTTAGGTAACAGTAGACGAGCGTTGTCCGATGCTCAGGAGGCAATTAAGCTCTCCCCATCAAATGTAAAGGCTATTTATCGAGCTGCTAAGGCTGCCCTTTCACTCAATTTATTGGCTGAAGCGAAATCCTATTGCGATTGTGGTCTAAAGATGGACCCCAATAACCAAGATTTGAAGAAGCTTGCCAAGCAGGTTGATACAAGGGAAGAGGAGCACGATCGGCGGGAGGCTCAAGTTTCCAAAGCTCTTCAAGAGGCCAAGGAATTGGTGTCTGCAATAGAAGATAGAGGGTTGAAGATTGGAAAGGCAATGTTTCGTGAACTTACAGGAATAAGAAAACCTGTTCTAGACAAAAGTAAAGTTCTTCATTGGCCGGTTCTTCTTCTGTATGCAGAGGTCATGTCAAGTGACTTCATTGAAGATTGTTGTGAGACTGACATGCTTTCAGCCCATCTTGACATTATATCCTTTCTGATGAGTCATCATGGATGGGGGATCGGGGCGGGGAATGGGTTCAAAAAAAAAAAAAAGTTGGTTCGGGGATTGAAGGTGGGGTCTTCGACCAATCCCCTAACCGTTGCCATCACTACTGATGAAGTGTTGACATTGCATATATTATCTTGTTAA 876 0.4452 MALWMNAGAAPSTEAETADLDAISALKESAAIELKEQGNEYVKKGKSHYSDAIDCYTRAINQNILPDSETSVLYANRAHVNLLLGNSRRALSDAQEAIKLSPSNVKAIYRAAKAALSLNLLAEAKSYCDCGLKMDPNNQDLKKLAKQVDTREEEHDRREAQVSKALQEAKELVSAIEDRGLKIGKAMFRELTGIRKPVLDKSKVLHWPVLLLYAEVMSSDFIEDCCETDMLSAHLDIISFLMSHHGWGIGAGNGFKKKKKLVRGLKVGSSTNPLTVAITTDEVLTLHILSC* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01968 291 ProSiteProfiles TPR repeat profile. 71 104 IPR019734 GO:0005515
Pte6g01968 291 Coils Coil 141 161 - -
Pte6g01968 291 SUPERFAMILY TPR-like 24 159 IPR011990 GO:0005515
Pte6g01968 291 CDD CTWD_Cns1-like 170 238 - -
Pte6g01968 291 Gene3D Tetratricopeptide repeat domain 26 157 IPR011990 GO:0005515
Pte6g01968 291 SMART tpr_5 71 104 IPR019734 GO:0005515
Pte6g01968 291 SMART tpr_5 31 66 IPR019734 GO:0005515
Pte6g01968 291 SMART tpr_5 105 138 IPR019734 GO:0005515
Pte6g01968 291 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 11 238 - -
Pte6g01968 291 Pfam Tetratricopeptide repeat 73 104 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01968 Pte-Chr6 36277480 36278723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01968 14 162 Calmodulin-binding Proteins AT3G25230 28.750 4.32e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01968 K24927 - cave:132166771 366.696