Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01966 ATGGCTACCCAAGGGCAAGTCATCACCTGCAAAGCGGCGGTGGCCTGGGAACCCAATAAGCCTTTGACTATCGAAGACGTACAGGTTGCTCCACCACAGGCTGGTGAGGTCCGTGTTAAAATTCTATATACCGCTCTCTGTCACACTGATGCTTACACTTGGAGTGGCAAGGATCCTGAAGGTCTCTTTCCCTGTATTCTTGGTCATGAAGCTGCTGGGATTGTGGAAAGCATTGGAGAAGGTGTATTTGAAGTTCATCCAGGAGACCATGTCATCCCCTGTTATCAGGCAGAATGCCGAGAATGTAAGTTCTGCAAATCAGGTAAAACAAATCTCTGCGGTAAAGTTCGTTCTGCCACTGGGGTTGGAGTCATGTTGAGTGATCGCAAGAGCCGTTTCTCAATAAATGGAAAACCAATCTATCATTTCATGGGGACCTCGACATTCAGCCAGTATACAGTTGTTCACGATGTTAGTGTTGCCAAAATTGATCCTATAGCTCCTTTAGAGAAAGTGTGTCTACTTGGTTGTGGCGTTCCAACTGGTCTTGGTGCTGTTTGGAACACTGCAAAAGTGGAACCTGGTTCGAATGTTGCCATCTTTGGCCTTGGAACCGTGGGGCTTGCTGTTGCTGAAGGTGCAAAAGCTGCAGGTGCTTCAAGAATAATTGGCATAGACATTGACAGCAAGAAATTTGATATTGCCAAGAACTTTGGTGTCACCGAGTTCGTCAATTCTAAGGATCATGATAAGCCAATTCAACAAGTCATAGTGGACATGACAGATGGTGGAGTTGACTACAGTTTTGAGTGCATTGGAAACGTCTCTGTGATGAGAGCAGCTTTGGAGTGCTGTCACAAGGGCTGGGGAACATCAGTTATTGTTGGCGTCGCAGCATCAGGGCAGGAAATATCAACTCGTCCTTTTCAGCTGGTGACTGGTCGAGTCTGGAAAGGAACAGCTTTTGGCGGATTCAAGAGTCGTTCCCAAGTGCCTTTGCTGGTTGACAAGTACCTAAAGAAGGAAATAAAGATTGACGAGTACATTACTCACCAGTTAACTCTTGGTGAGATAAACAACGCATTTGATCTTATGCATGAAGGAGGCTGCCTCCGTTGTGTGCTTGCAATGCACTAG 1137 0.4626 MATQGQVITCKAAVAWEPNKPLTIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESIGEGVFEVHPGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGVMLSDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPIAPLEKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKFDIAKNFGVTEFVNSKDHDKPIQQVIVDMTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPLLVDKYLKKEIKIDEYITHQLTLGEINNAFDLMHEGGCLRCVLAMH* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01966 378 Gene3D - 182 320 - -
Pte6g01966 378 FunFam S-(hydroxymethyl)glutathione dehydrogenase 13 195 - -
Pte6g01966 378 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 341 IPR036291 -
Pte6g01966 378 CDD alcohol_DH_class_III 8 375 IPR014183 GO:0006069|GO:0008270|GO:0051903
Pte6g01966 378 SUPERFAMILY GroES-like 3 193 IPR011032 -
Pte6g01966 378 Gene3D - 13 372 - -
Pte6g01966 378 FunFam S-(hydroxymethyl)glutathione dehydrogenase 182 320 - -
Pte6g01966 378 PANTHER ALCOHOL DEHYDROGENASE 5 375 - -
Pte6g01966 378 SUPERFAMILY GroES-like 326 375 IPR011032 -
Pte6g01966 378 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Pte6g01966 378 Pfam Zinc-binding dehydrogenase 206 327 IPR013149 -
Pte6g01966 378 NCBIfam S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 10 377 IPR014183 GO:0006069|GO:0008270|GO:0051903
Pte6g01966 378 Pfam Alcohol dehydrogenase GroES-like domain 35 162 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01966 Pte-Chr6 36271554 36275248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01966 10 331 Monolignol Biosynthesis Gene Families AT1G72680 27.964 6.77e-18 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01966 K00121 - cave:132165797 726.857