Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01951 ATGAGTCACTTCGTTCCAGATTTTGAAATGGAAAACGAGGACGATTCTCTTCCTACAGCTTCAGCTGATACTGTCCCGCATCCCTTGTGGAAATCCTCTCTGCCAGAAGATGAAATTATTGAGTTGCTATGGCATGGTGGCCAATTAGTGATGCAGAGTCAAAATCAGAGGTCTGCTAAGAAACCTGCACCAGGTTTAGCGGCAACGACTCAGAGTCACAGATACAGTGCCACCGACGCTCAGCTCCCAACAGATTCATGTGAAGCGAGAGAGATAAGATCATCACAATCACAGATTCAAATGGAACAGCAGCAACGGCAGCATATGTTTATGCAAGAAGATGAAATGATTTCCTGGCTTCACTATCCAATGGTGGACGAACCTCCTCTGGAAACAAATTTTTGCGCCGACTTACTCTATTCTTCGACTGCTATAGCGAACAACACCAGCAATAGCAGTGATGTTGCTGCCACCGCCTCACCCGTTGTCACTGCTACCACCGGACCTCCTGTGCATTTATCTCGGAATACAGAACTTTCACAGCCATCGACCACGACGGTGGCAGCTGAGGTTTCGGCTCGTAGGCCGCCGATTCCGCCGTCGAGGAGCACGATACCGAACTTCGCGCACTTCTCAAGGCACAATGTGAAAGCTCGTGCTGAGCCGAGCGTACATCTTAGGCAGCCGTCGATTTCGAAGACAGCGGTCGATTCCAATGAAACTCCAGCGATGGCACGTCCTTCAGGAATCTCAGAGATCAGGAAGAATTCCGCTGATGTTGACCCTACACGCGTAGCGGAGAGCAGCGCAGTGAACGCACAGGCGACGATAACATCGTCGGCCGGTTGGACGGATGTGACTCCTTGCGAGGTCAAGTTAACATCATCTCCGGGCGCTTCCAGTGCCAGTGCGGAGCCGATTCGTAAGGCGCCTACAGAAGATCGAAAACGCAAGGGTCGTGAACCTGAGGATTGCGAAGAATACAGCGAGGATGTTGATTTCGAATCACTGGATGCCAAAAAACAACCTCGTGGATCAACTTCTACAAAGAAATCCCGTGCTTCGGAGGTCCACAATCTTTCAGAGAGGAGACGTCGAGATAGGATAAATGAAAAGATGAGGGCTTTGCAAGAACTAATTCCTCGTTGCAACAAGTCAGACAAAGCTTCAATGTTGGATGAAGCCATTGAGTATCTGAAGTCCCTTCAGTTACAAGTGCAGATGATGTCCATGGGATGTGGCATGGTCCCTATGATGTTACCCGGTTTTCCACACTATATGCCAACTATGGAAATGGGAATTGGGATGGGTATGGGCATGGAGATGGAGATGGGAATGAACAGAGCAGTGATGCCATTTTCTAATGTGTTAGCTGGTCCAGCATTTCCAGCACCAGCAGCCACAGCTCATTACGGACCAAGGTTTTTTACGCCTCCTTTTCCTATGCCACTTGTTCCACCACCTGGTTCATCCAGAACGCAAGCAACAACTCAGGCTGACCATATACTAACGTCACTTGCTTCACCAGATCCAAATCAGTCACGGAGCACAACTTTATCTGATCCTTATCAGCAATATCTTGGTCCCTACCAGATGCAATTGCAATCAACACAGAATCAAGCGATGAACCAGCCGAGCCTCAGCAAGCCAACAACCAGCAAACCCAATGAGAATGGGGAAATCCGCCAGCCAGGTTAA 1698 0.4912 MSHFVPDFEMENEDDSLPTASADTVPHPLWKSSLPEDEIIELLWHGGQLVMQSQNQRSAKKPAPGLAATTQSHRYSATDAQLPTDSCEAREIRSSQSQIQMEQQQRQHMFMQEDEMISWLHYPMVDEPPLETNFCADLLYSSTAIANNTSNSSDVAATASPVVTATTGPPVHLSRNTELSQPSTTTVAAEVSARRPPIPPSRSTIPNFAHFSRHNVKARAEPSVHLRQPSISKTAVDSNETPAMARPSGISEIRKNSADVDPTRVAESSAVNAQATITSSAGWTDVTPCEVKLTSSPGASSASAEPIRKAPTEDRKRKGREPEDCEEYSEDVDFESLDAKKQPRGSTSTKKSRASEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMLPGFPHYMPTMEMGIGMGMGMEMEMGMNRAVMPFSNVLAGPAFPAPAATAHYGPRFFTPPFPMPLVPPPGSSRTQATTQADHILTSLASPDPNQSRSTTLSDPYQQYLGPYQMQLQSTQNQAMNQPSLSKPTTSKPNENGEIRQPG* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01951 565 MobiDBLite consensus disorder prediction 308 325 - -
Pte6g01951 565 MobiDBLite consensus disorder prediction 54 83 - -
Pte6g01951 565 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 353 402 IPR011598 GO:0046983
Pte6g01951 565 MobiDBLite consensus disorder prediction 291 367 - -
Pte6g01951 565 MobiDBLite consensus disorder prediction 69 83 - -
Pte6g01951 565 SMART finulus 359 408 IPR011598 GO:0046983
Pte6g01951 565 PANTHER TRANSCRIPTION FACTOR PIF3 27 546 IPR044273 GO:0003700|GO:0006355
Pte6g01951 565 CDD bHLH_AtPIF_like 353 416 IPR047265 -
Pte6g01951 565 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 351 420 IPR036638 GO:0046983
Pte6g01951 565 MobiDBLite consensus disorder prediction 504 565 - -
Pte6g01951 565 MobiDBLite consensus disorder prediction 1 21 - -
Pte6g01951 565 MobiDBLite consensus disorder prediction 234 271 - -
Pte6g01951 565 Pfam Helix-loop-helix DNA-binding domain 357 403 IPR011598 GO:0046983
Pte6g01951 565 Gene3D - 348 411 IPR036638 GO:0046983
Pte6g01951 565 FunFam Basic helix-loop-helix transcription factor 348 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01951 Pte-Chr6 36042212 36047255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01951 1 408 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 36.124 2.24e-57 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte6g01951 HLH 1.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01951 - - qsa:O6P43_006803 521.546