LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte6g01946	ATGGCGGCATCAAGGCGGCTCCGAGACATTCAATCTCAACATGGGAACAAGACATGCGTCGATTGCGCACAGAAGAATCCACAATGGGCTTCTGTATCCTATGGCATATTCATGTGTTTAGAATGTTCAGGCAAGCACCGTGGTCTCGGGGTACACATCTCCTTCGTCCGATCCGTTACCATGGACTCCTGGTCGGAGATCCAGATCAAAAAAATGGAATCTGGTGGTAATGACAAGCTCAATGTTTTCCTCGCTCAGTATGGGATACCCAAGGAGACGGATATTGTTGCAAAGTACAACAGTAACGCTTCCAGTATATATAGGGACCGAATTCAAGCTCTTGCTGAAGGTCGGCCATGGCGGGATCCACCAGTTGTGAAGGAGAATCTTGGTAGCAACCATAGAAAACCACCATTGTCACAAAGCAACAGAGGTGGTGGTGGATATAATAATTGTATTAACAATAACAGTGAAGGGTGGGATAGTTGGGACAACGATGATGATGGGTTTAGATCTTCTAACGATATAAGGAGGAACCAATCGACTGGAAATATGAGATCCGCGAATGGTCTGGGTGGGGCACCGATGAGATCAAAGTCCAACGAGGATATTTATACGCGGTCGCAATTGGAAGCATCTGCTGCTAATAAAGATAACTTTTTTTCTAGGAAGATTGCTGAGAATGAGTCCAGACCTGAAGGAATACCACCTTCACAAGGAGGAAAGTACGTTGGATTCGGATCGAGTCCTCCACCTCAACAGAGAAATAATAATGGAGAAACCGATTATTTTTCCGTTGTTTCTCAGGGGATTGGTAAATTGTCATTGGTTGCTGCTTCTGCGGCTCAATCCGCTGCTAATGTTGTCCAGGCAGGGACTAGAGATATAACCACTAAGGTAAAGGAAAGTGGCTATGATCAGAAGGTCAATGAAACTGTCAGTGTCGTTTCTGCAAAGACAACTGAATTTGGACATAGGAGTTGGGGCATAATGAAAGGTGTTGTGGCGTTGGCTACTCAGAAGGTTGGGGAGTATACTAAGGAAGGTGGCAGTAACTGGGGTGCTGATAATTTGCAGCGAAATGAAATTGAGAGAAATGGTCGTTATCAGGATTACAATCATCAGAGCAAAGAATCGAATTCTTCTGTAAGATGGCAGTCTTCACCTGGTGGGAATTCCAATTCTTACAGTCCTAGATCGTGGGATGATTGGGACCAGAAAGATACTAGGAAGGAAGGACCGAAGAAGGTGACATCATCTAGCAACATCAATGACTGGGCAGGCTGGGATGATTCCAAAGATGATGGATATGATCATTTCAACAGTGCCCCTCATAAGAATGCTGTCAGTCACAAAGAGAAATCAGACTCGGCGTGGACTGGTGGAGGCTTTCTTTAA	1398	0.4499	MAASRRLRDIQSQHGNKTCVDCAQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMESGGNDKLNVFLAQYGIPKETDIVAKYNSNASSIYRDRIQALAEGRPWRDPPVVKENLGSNHRKPPLSQSNRGGGGYNNCINNNSEGWDSWDNDDDGFRSSNDIRRNQSTGNMRSANGLGGAPMRSKSNEDIYTRSQLEASAANKDNFFSRKIAENESRPEGIPPSQGGKYVGFGSSPPPQQRNNNGETDYFSVVSQGIGKLSLVAASAAQSAANVVQAGTRDITTKVKESGYDQKVNETVSVVSAKTTEFGHRSWGIMKGVVALATQKVGEYTKEGGSNWGADNLQRNEIERNGRYQDYNHQSKESNSSVRWQSSPGGNSNSYSPRSWDDWDQKDTRKEGPKKVTSSSNINDWAGWDDSKDDGYDHFNSAPHKNAVSHKEKSDSAWTGGGFL*	466

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte6g01946	465	MobiDBLite	consensus disorder prediction	372	465	-	-
	Pte6g01946	465	MobiDBLite	consensus disorder prediction	134	160	-	-
	Pte6g01946	465	FunFam	ADP-ribosylation factor GTPase-activating protein	1	129	-	-
	Pte6g01946	465	Pfam	Putative GTPase activating protein for Arf	5	98	IPR001164	GO:0005096
	Pte6g01946	465	Gene3D	Arf GTPase activating protein	1	126	IPR038508	-
	Pte6g01946	465	SUPERFAMILY	ArfGap/RecO-like zinc finger	5	112	IPR037278	-
	Pte6g01946	465	MobiDBLite	consensus disorder prediction	373	400	-	-
	Pte6g01946	465	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	4	120	IPR001164	GO:0005096
	Pte6g01946	465	MobiDBLite	consensus disorder prediction	401	415	-	-
	Pte6g01946	465	CDD	ArfGap_ArfGap1	3	117	-	-
	Pte6g01946	465	PRINTS	HIV Rev interacting protein signature	35	52	IPR001164	GO:0005096
	Pte6g01946	465	PRINTS	HIV Rev interacting protein signature	16	35	IPR001164	GO:0005096
	Pte6g01946	465	PRINTS	HIV Rev interacting protein signature	56	77	IPR001164	GO:0005096
	Pte6g01946	465	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED	1	464	IPR044519	GO:0005096\|GO:0016192
	Pte6g01946	465	SMART	arf_gap_3	1	120	IPR001164	GO:0005096
	Pte6g01946	465	MobiDBLite	consensus disorder prediction	118	200	-	-
	Pte6g01946	465	MobiDBLite	consensus disorder prediction	226	259	-	-
	Pte6g01946	465	MobiDBLite	consensus disorder prediction	428	453	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte6g01946	Pte-Chr6	36007563	36011114	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte6g01946	5	91	C2H2 Transcription Factor Family	AT4G21160	46.591	1.76e-20	90.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte6g01946	K12492		-	tcc:18597797	658.292