Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01942 ATGCCAAATGGGCTTCCTGATGGTGCGGAACTGGCATACTATGTCAAAGGACAGCGGTTACTTGGTGGGTACAAGCAAGGAAATGGTATAGTGTGTGGTTGTTGTGAGAGAGAGATCAGTCCTTCACAGTTTGAAGCCCATGCAGGAATGGCAGCCAGACGTCAACCTTATCGTCACATTTATACTTCTAATGGACTGACACTTCACGATATAGCGCTCTCATTGGCAAATGGTCAAAACATTGCTACTGGAGATAGTGATGATATGTGTGCAGTGTGTGGTTATGGAGGAGATTTGGTTCTGTGTAATGGATGCCCAAGGGCTTTTCATCTAGCTTGCTTAGACTTGCAGTATGTTCCTGACGATACATGGCATTGTGTAAACTGTAGAGATAATACTGCCAATTCCAGAGAGGCAACAAGGGAATTCTTTGTAACGGGAAGACCTATTATGATACGCTTATCGAGGGTTGTTAAAGCTCCTGAATTTGAAATGGGTGGCTGTGTTGTTTGCAGGGCATATTTCAGTGCTGCTACATTTGATGAGAGAACAGTCATCATTTGTGACCAGGTAAATTTGCATCCATATTTGATGAGTTTTTCTTTACAATATCTCTGGCCCTTCATTGTCTTCCCAATTCAGTGTGAGAAGGAATATCACGTTGGTTGCTTGCGGGTCACTGGACGTTGTGAGTTAACACAGCTGCCCAAGGAGAAATGGTTTTGTTCTGATGACTGCAATAGAATATATGTTGCCCTACAAAATTCAGTTTCCAATGGTGCCGAGATCGTACCTGCTTCTTTGTCTTGTATAATCAGTAAGAGGCATGTTCAGAGAGACATACACATTGGTGATTCTGTAGATGGTGTCCAATGGCGGATTCTGAGTGGAAAAAGTCGTTATCCTGAACATTTGCCAATTCTCTCACGCGCTGCTGCAATTTTTAGGGAGTGCTTTGATCCCATTGTTGCAAAATCTGGTCGGGACCTGATTCCAGTGATGGTCTATGGGCGGAACATATCTGGGCAAGAGTTTGGGGGGATGTATTGCATTGTTCTAATGGTGAAGTCTATGGTTGTATCTGCTGGCCTACTCAGGGTTTTTGGGCGGGAAGTAGCTGAACTTCCTTTGGTTGCTACAAGCAGAGAATACCAAGGCAAAGGTTACTTCCACGTGTTGTTCTCTTGTATCGAGAGACTGCTTGTATCCTTGAATGTGGAAAATCTCGTACTACCTGCAGCAGAGGATGCTGAATCAAAATGGACAAAGAATTTAGGCTTCAGAAAGATGAGTGAAGATCAGTTGTCTAGATACATGCGTGAGGTGCAGCTAACTATTTTCAAGGGAACATCAATGCTGGTGAAGGCAGTGCAGAAAATAGCAGAGTGA 1389 0.437 MPNGLPDGAELAYYVKGQRLLGGYKQGNGIVCGCCEREISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNIATGDSDDMCAVCGYGGDLVLCNGCPRAFHLACLDLQYVPDDTWHCVNCRDNTANSREATREFFVTGRPIMIRLSRVVKAPEFEMGGCVVCRAYFSAATFDERTVIICDQVNLHPYLMSFSLQYLWPFIVFPIQCEKEYHVGCLRVTGRCELTQLPKEKWFCSDDCNRIYVALQNSVSNGAEIVPASLSCIISKRHVQRDIHIGDSVDGVQWRILSGKSRYPEHLPILSRAAAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCIVLMVKSMVVSAGLLRVFGREVAELPLVATSREYQGKGYFHVLFSCIERLLVSLNVENLVLPAAEDAESKWTKNLGFRKMSEDQLSRYMREVQLTIFKGTSMLVKAVQKIAE* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01942 462 ProSitePatterns Zinc finger PHD-type signature. 90 129 IPR019786 -
Pte6g01942 462 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 346 432 IPR016181 -
Pte6g01942 462 Pfam Tify domain binding domain 23 72 IPR032308 -
Pte6g01942 462 SUPERFAMILY FYVE/PHD zinc finger 75 130 IPR011011 -
Pte6g01942 462 CDD PHD1_AIRE 89 129 - -
Pte6g01942 462 Gene3D - 290 460 - -
Pte6g01942 462 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein 77 160 - -
Pte6g01942 462 PANTHER AUTOIMMUNE REGULATOR 212 457 - -
Pte6g01942 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 153 IPR013083 -
Pte6g01942 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 249 IPR013083 -
Pte6g01942 462 ProSiteProfiles Zinc finger PHD-type profile. 87 132 IPR019787 -
Pte6g01942 462 SMART PHD_3 89 130 IPR001965 -
Pte6g01942 462 SMART PHD_3 167 246 IPR001965 -
Pte6g01942 462 FunFam PHD finger family protein 289 456 - -
Pte6g01942 462 Pfam PHD-finger 89 130 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01942 Pte-Chr6 35985529 35989484 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01942 1 462 PHD Transcription Factor Family AT3G53680 63.578 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte6g01942 TDBD 5.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01942 - - qsa:O6P43_006776 707.212