Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01916 ATGGCCGCCGCAGCCGCTCGTCCCCTCGTCTCCATTCAAACCCTCGATGGGGACATGGCTACCGACTCCACCCAGAACCTTCCCCTTCCTGATGTCATGAAGGCCTCTATCCGACCCGACATTGTCACTTTCGTCCACTCCAACATCTCCAAGAATAGCCGCCAACCCTATGCCGTCAGCAAGCGCGCCGGTCACCAGACCTCCGCTGAGTCATGGGGGACGGGTCGTGCTGTCTCTCGTATCCCCCGTGTTCCTGGTGGCGGTACCCACCGTGCAGGTCAGGGTGCCTTCGGTAACATGTGTCGTGGTGGACGCATGTTTGCTCCCACCAAGATATGGCGCCGATGGCACCGCAAGATCAATGTCAATCAGAAGAGGTACGCTGTTGTTTCTGCCATTGCTGCTTCCGCCATACCTTCTCTCGTCATGGCTCGTGGTCACCGGATCGAGACTGTTCCGGAATTACCTCTTGTGATCAGTGATTCTGCTGAGAGTGTAGAGAAGACCAGAGATGCCATCAAGGTCTTGAAGCAAGTTGGTGCTTTTCCAGATGCCGAGAAAGCTAAGGATAGCCAAGCTATCCGACCTGGTAAGGGTAAGATGAGAAACCGTCGCTATATCTCCAGAAAGGGACCGTTGATTGTGTACGGCACTGAAGGGGCAAAGCTTGTGAAGGCTTTTAGGAATATTCCTGGTGTTGAGCTTGTTCACGTTGATAGACTCAATTTGCTGAAGCTTGCTCCTGGAGGACATCTTGGTAGGTTTGTCATTTGGACCAAGACCGCATTCGAGAAGCTAGATTCCATTTATGGTTCATTCGACAAGCCATCTGAGAAGAAAAAGGCTTACGTGCTTCCAAGGGCTAAGATGGTGAATGCTGATCTGGCCAGGATTATCAACTCTGATGAAGTTCAGTCTGTTGTGAAGCCAATTAAGAAGGGGAGCAAGAGAGCTCCACTGAAGAAGAACCCACTCAAGAATCTTAACGCTATGTTGAAGCTGAACCCATATGCTAAGACTGCCAAGAGAATGTCCCTGTTGGCCGAGGCACAGCGTGTGAAGGCTAAAAAGGAGAAACTTGATAAGAAGAGGAACATCATCCCCAAGGAGGAGGCAGACAAGATCAAAGCTGCTGGCAAAGCATGGTACCAGACGATGATCTCAGATTCCGATTATACAGAGTTCGAGAACTTCTCTAAGTGGCTTGGAGTATCGCAGTAG 1221 0.5094 MAAAAARPLVSIQTLDGDMATDSTQNLPLPDVMKASIRPDIVTFVHSNISKNSRQPYAVSKRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAIPSLVMARGHRIETVPELPLVISDSAESVEKTRDAIKVLKQVGAFPDAEKAKDSQAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVELVHVDRLNLLKLAPGGHLGRFVIWTKTAFEKLDSIYGSFDKPSEKKKAYVLPRAKMVNADLARIINSDEVQSVVKPIKKGSKRAPLKKNPLKNLNAMLKLNPYAKTAKRMSLLAEAQRVKAKKEKLDKKRNIIPKEEADKIKAAGKAWYQTMISDSDYTEFENFSKWLGVSQ* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01916 406 FunFam 60S ribosomal protein L4 4 309 - -
Pte6g01916 406 Coils Coil 343 363 - -
Pte6g01916 406 MobiDBLite consensus disorder prediction 55 74 - -
Pte6g01916 406 Pfam 60S ribosomal protein L4 C-terminal domain 281 353 IPR025755 -
Pte6g01916 406 Pfam Ribosomal protein L4/L1 family 28 267 IPR002136 GO:0003735|GO:0005840|GO:0006412
Pte6g01916 406 ProSitePatterns Ribosomal protein L1e signature. 121 147 IPR013000 -
Pte6g01916 406 MobiDBLite consensus disorder prediction 55 95 - -
Pte6g01916 406 Gene3D - 4 309 IPR023574 GO:0003735|GO:0005840|GO:0006412
Pte6g01916 406 PANTHER 60S RIBOSOMAL PROTEIN L4 5 399 IPR045240 -
Pte6g01916 406 SUPERFAMILY Ribosomal protein L4 13 268 IPR023574 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01916 Pte-Chr6 35859398 35861767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01916 1 407 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 83.538 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01916 K02930 - csv:101212211 731.865