Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01909 ATGGTTTGCATGATTGTTCCCAGAAAAACACGTGGAGCTGGAGCTGCTCGCAAGCTTAAAACTCATCGTAGGGAGGAACGATGGGCAGACAAAGCATATAAGAAGTCGCATCTTGGTAACGAATGGAAGAAACCATTTGCTGGATCTTCCCATGCTAAGGGAATTGTGCTGGAGAAGATTGGCATTGAGGCAAAGCAGCCTAACTCTGCTATCAGGAAATGCGCCAGAGTTCAATTGATTAAGAACGGCAAGAAGATTGCAGCGTTTGTTCCGAATGATGGTTGCTTGAATTACATTGAAGAGAATGATGAAGTGTTGATTGCTGGATTTGGACGGAAAGGTCACGCTGTTGGTGATATTCCCGGTGTTCGATTCAAGGTTGTTAAGGTTTCAGGGGTCTCCCTTCTGGCCCTCTTCAAGGAGAAAAAGGAGAAACCCAGATCTTAA 447 0.4519 MVCMIVPRKTRGAGAARKLKTHRREERWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01909 148 CDD Ribosomal_S23 32 145 IPR005680 GO:0003735|GO:0006412|GO:0015935
Pte6g01909 148 FunFam 40S ribosomal protein S23 31 148 - -
Pte6g01909 148 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 8 148 IPR006032 GO:0003735|GO:0005840|GO:0006412
Pte6g01909 148 SUPERFAMILY Nucleic acid-binding proteins 27 146 IPR012340 -
Pte6g01909 148 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 22 148 IPR006032 GO:0003735|GO:0005840|GO:0006412
Pte6g01909 148 ProSitePatterns Ribosomal protein S12 signature. 65 72 IPR006032 GO:0003735|GO:0005840|GO:0006412
Pte6g01909 148 Gene3D - 31 148 IPR012340 -
Pte6g01909 148 NCBIfam 30S ribosomal protein S12 13 147 IPR005680 GO:0003735|GO:0006412|GO:0015935
Pte6g01909 148 Pfam Ribosomal protein S12/S23 37 147 IPR006032 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01909 Pte-Chr6 35813892 35814671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01909 9 149 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 94.326 6.32e-93 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01909 K02973 - pda:103701997 278.87