Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01900 ATGGGACACAGATATATATACAACACACCACAAATGTTTGATGGTGAACATGAGCAAAACTGGAATCACATGCAAACAGATCAACACTGCGTGCATCTGGGTAGGAGTTGTACTGCTGAGAATGCCCCACTGTTTTATCACATGGAAAATATGTCTGTAGAAGGTCTTCCTTTCACTTCTCATTTGAGTGCTGCACCTGTTCCAAGCTCAAATGGTTATGGGTCCTCAGATGTCATGGTTGAAGTGCCGCCTCATCAGCCAGATCCATCAGGGTCAACTCATGACCATTTTCTGCATTCATCATCTGCTGGGTTCTGCCCCCTCCCTGAGAGTTACGTTCTGCGTGGTTCTTCATCCATCTACGAAGGACAGAGTTTTCAAGTAGTTGAGGGTGGTCTCTTTGATCTCACGATGGGAAGTGGCAGGGGGCGACACAAACGGAAGAGCCCAGGAATTCCCTCTGTCTGTGAAAGGGGCAGTACTAGTAGATACTTCAATTCTGGATCAGCAACTGATCTTCCTACTTCAGAGTTGCTGCAGGAGAAACAAACCATAGATTCTCAATATTTGCCTTGGGATCAGGTTGACATAAATCCTCCTTGTAGGGGCAATCACCTTTTGATCAGGGGTGATGGTACTTTAAGGAATGTGAGAAGCCGTTCTGCAGTTGGTGTAGAGTCCAATCCGGGTAATCATCCACACACCTCCTATTGTTCAAGTCATGCAAGTGATCAATCTGGCGCGGTGGATCTTCCTGGTCAAGGTTCGAGCTCTTCATCTAGGGAGTGGAGCCAAACAAACTTATCTCATGGACATCGAGGATTGTTGTTTCCAGATACATGTGGCTTCGGTCATGATACAAATCATTTCCTTGTCGGTAGCAGTGCTAGTAATGCTCCTCTAGACATGAGGGCATATCATCATGAATTTTCCACAAGAAACCCCATTCTTCTGCGGAGTTTACATGGAAATTCTACCCAGTCTTTAAGGGGAGATCGGAGTAACTACTCGCAAAGATCTAATCCATCTTTTAGGGCTTCATCAAGCTCAAGAATGGGACATGTTGGTGATGGGTTGCATGAGGTGACGGAGAGTTACCCTGCTAGGCATTCAAGGTTGGCCAGCACCATGTGGCGTAACAGTGAGAGAAATGGGAGATCTAGAGTAGCCATTGAAAGATATCGATCGTTGGCTGAGAATGCTGCTTTGCATGATCGATTCTCATCTGAGGGCTTTTTGATTGTTGGTCGTGCATCGTTGTATGGATCTAGAAATTTGTTTGATCAGCATAGGGACATGAGGATGGATATAGACAACATGACTTATGAGGAGCTACTTGCACTTGGGGAACGAATTGGGCATGTTAACACAGGCTTATCTGAAGATCTCATCTCCAAATGTATGGCTAAAACGATTTATTGTTCTTCTGACCAAAGTCAAGAGGAAGGAACTTGTGTTATCTGTCTGGAGGAATATAAAGATATGGACAATGTCGGTGCACTAAAAACTTGTGGCCACGATTATCACGTGGGCTGCATCAGAAGGTGGTTATCTGTGAAGAACATCTGCCCTATATGCAAAGCCGCGGTGGATGATTCGAAGGAGAAATAA 1611 0.4507 MGHRYIYNTPQMFDGEHEQNWNHMQTDQHCVHLGRSCTAENAPLFYHMENMSVEGLPFTSHLSAAPVPSSNGYGSSDVMVEVPPHQPDPSGSTHDHFLHSSSAGFCPLPESYVLRGSSSIYEGQSFQVVEGGLFDLTMGSGRGRHKRKSPGIPSVCERGSTSRYFNSGSATDLPTSELLQEKQTIDSQYLPWDQVDINPPCRGNHLLIRGDGTLRNVRSRSAVGVESNPGNHPHTSYCSSHASDQSGAVDLPGQGSSSSSREWSQTNLSHGHRGLLFPDTCGFGHDTNHFLVGSSASNAPLDMRAYHHEFSTRNPILLRSLHGNSTQSLRGDRSNYSQRSNPSFRASSSSRMGHVGDGLHEVTESYPARHSRLASTMWRNSERNGRSRVAIERYRSLAENAALHDRFSSEGFLIVGRASLYGSRNLFDQHRDMRMDIDNMTYEELLALGERIGHVNTGLSEDLISKCMAKTIYCSSDQSQEEGTCVICLEEYKDMDNVGALKTCGHDYHVGCIRRWLSVKNICPICKAAVDDSKEK* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01900 536 SMART ring_2 485 526 IPR001841 -
Pte6g01900 536 MobiDBLite consensus disorder prediction 325 350 - -
Pte6g01900 536 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 450 530 - -
Pte6g01900 536 SUPERFAMILY RING/U-box 476 531 - -
Pte6g01900 536 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 450 532 IPR013083 -
Pte6g01900 536 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 144 530 IPR045191 GO:0061630
Pte6g01900 536 CDD RING-H2_RNF24-like 483 530 - -
Pte6g01900 536 MobiDBLite consensus disorder prediction 325 353 - -
Pte6g01900 536 MobiDBLite consensus disorder prediction 221 267 - -
Pte6g01900 536 Pfam Ring finger domain 484 527 IPR001841 -
Pte6g01900 536 ProSiteProfiles Zinc finger RING-type profile. 485 527 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01900 Pte-Chr6 35765619 35771320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01900 1 530 C3H Transcription Factor Family AT2G37150 40.182 3.54e-103 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01900 - - qsa:O6P43_006681 686.411