Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01899 ATGGAGACAATTTGTAAATCAGAAATTCAACTCCCTCCTGGGTTTAGATTCCACCCTTCTGATGAGGAGCTCATTATCCACTATCTGAGAAACAAAGTGGCTTCCACTCCTCTTCCTGGTTCTTTCATAGCAGAAATTGATCTTTACAAGTACAATCCGTGGGATCTTCCAAAAAAAGCTTTGTTTGGAGAGGATGAATGGTTTTTCTTTACTCCAAGAGACAGAAAGTACCCAAATGGACTAAGGCCAAATAGAGCAGCTGGTTCAGGTTATTGGAAAGCTACAGGCACTGATAAACCTATTCTCACTGCTTCCGGGATGAAGAGCATAGGAGTGAAGAAAGCACTTGTGTTCTACCAAGGGCGTCCTCCAAAAGGTTCCAAGACTGATTGGATCATGCATGAATATAGATTGCTAGATTCAATCATCAGAAACTCTAAGAAGAAAGGATCCATGAGACTAGATGACTGGGTTCTTTGCCGGGTTCGACAGAGGAACAGCAATTCTAGCAACAATTTGGAAGACCGAAAGGAACCTGGTGACGAACCATTCAGCTTTCTTGAACAAACAGCTGATCCACCATCTTCAATCACGAATGATAATATTGAACTGGTTAAAAACTATATATACAACGAGTTTCCAATGCTACCTTACATTTTTGCTTCACTTAATTTACCAGTCAATGCCGATTTAGCCTCCAGCACACAATGCAGCGATGACAAAAGACCAAGTGATTCATTTTATGAAGACAACACGGATATAATGGAAAGGCAGACATCACCATCAGCACCTGCAACTGAAAGTTTGTATAACCCCCTGAAGAGAAAACACGTGGAGGTAAATCAGCTAGACCTCAACATTCTACAGCAAAGTGAAAATTGCGAGGAGGAAGTTCGGACACCTGTAAGCAGTCATGCACTGGCAACTGTTTCCGGTGAAACCAACCAGTACAATGATTACAATTTCAACGACTTTGATCAATGGAGTTTCAATACACAATTAGACGACCTTAATAACTTGGAGTTGTGA 1029 0.4121 METICKSEIQLPPGFRFHPSDEELIIHYLRNKVASTPLPGSFIAEIDLYKYNPWDLPKKALFGEDEWFFFTPRDRKYPNGLRPNRAAGSGYWKATGTDKPILTASGMKSIGVKKALVFYQGRPPKGSKTDWIMHEYRLLDSIIRNSKKKGSMRLDDWVLCRVRQRNSNSSNNLEDRKEPGDEPFSFLEQTADPPSSITNDNIELVKNYIYNEFPMLPYIFASLNLPVNADLASSTQCSDDKRPSDSFYEDNTDIMERQTSPSAPATESLYNPLKRKHVEVNQLDLNILQQSENCEEEVRTPVSSHALATVSGETNQYNDYNFNDFDQWSFNTQLDDLNNLEL* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01899 342 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 262 - -
Pte6g01899 342 MobiDBLite consensus disorder prediction 168 198 - -
Pte6g01899 342 Pfam No apical meristem (NAM) protein 12 138 IPR003441 GO:0003677|GO:0006355
Pte6g01899 342 ProSiteProfiles NAC domain profile. 11 165 IPR003441 GO:0003677|GO:0006355
Pte6g01899 342 SUPERFAMILY NAC domain 6 165 IPR036093 GO:0003677|GO:0006355
Pte6g01899 342 Gene3D NAC domain 20 170 IPR036093 GO:0003677|GO:0006355
Pte6g01899 342 FunFam NAC transcription factor 20 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01899 Pte-Chr6 35753427 35754670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01899 1 174 NAC Transcription Factor Family AT1G61110 63.102 2.70e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte6g01899 NAM 1.4e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01899 - - qsa:O6P43_010311 389.037