Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01896 ATGAGACATGAATTGCAAGAAATATATGGCATTGGAAACTCAGTTGATAATGACATTGATGGAAATGTCTTTGCGAAAGAATGTGTGATCTGCTTGTCAGAACCTTGTGATACAACTGTTCTCCCTTGCAGGCACATGTGTATGTGCCAAGATGTTGGGGCGGCAGACGAATCGGTGCCCAATATGCTTCTAGAGATTAAGCCTTTCAAGTCTTCTGTATCTGCAACATTGCACTCAACTTCGTGTCAAGAAATGCCTTCAGGAGATATTCATTAA 276 0.413 MRHELQEIYGIGNSVDNDIDGNVFAKECVICLSEPCDTTVLPCRHMCMCQDVGAADESVPNMLLEIKPFKSSVSATLHSTSCQEMPSGDIH* 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01896 91 Pfam Zinc finger, C3HC4 type (RING finger) 26 50 - -
Pte6g01896 91 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 62 IPR013083 -
Pte6g01896 91 PANTHER MAHOGUNIN 1 51 IPR045194 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01896 Pte-Chr6 35739132 35739991 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01896 2 46 C3H Transcription Factor Family AT3G09770 69.388 5.20e-15 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01896 - - psom:113310423 95.9005