Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01888 ATGATACTCGATAGAAAGAGGAAGATAAGAAAATTAGTTTGTCCTTGTTGTGCATTCTGCCAAGGAAGGGACCAATATATATATATGGTGGTCCAGCATGTTTCCCTGGCAGATGAAATTCGTCACTCCCTGAAGTTGCAGCAACGCCGTTCACTAAGTGTCATGGCTCCTAGTAGATCAAGATCTGTAAGGTTCCAGTATGACGTTGAAACGGCGAAACACAGTCCAATCAGAAAAAGCCAGTCGCCAATGGCTACCTTCAAAAAGACTCACGGAAAGAATGAAAAGGAACTAAGCAGAGTTTTTTCAGAGGATTATGAAGTTATAGAGAAGATGATATTGGACCCTAGGGGACCTGTAGTAAATAGATGGAACAAAGTCTTTTTAGTAGCATGCTTAATTTCACTGTTTGTTGATCCTCTTTTCTTCTACCTACCAGTGGCAAAGAAAGAAATGTGCATTGATACGTCTGTACCTCTTGAAGTATACCTTACTTTCATTAGGTCAATAGTTGATGCGTTTTATGTTGTTCAGATTTTTTTGAGCTTTAGGATAGCATATGTTGCTCCTTCTTCTCATGTATTTGGAAGAGGAGAGCTTGTTATAGACCCTTCAGAGATTGCTTCCAGGTACCTTCGTAAGGACTTTTGGATACATCTTCTTGCTGCACTACCCCTTCTACAGTTGTTGATTTGGGCTGCGATACCGAATGTAACTGGTGCAGAAATGATTGCTTCGAGGAATGTTCTTCCACTTTTTACCATTTTCCAGTATCTACTGAGGTTGTATCTTATATTTCCTCTGTCATCTCGGATCATCAAAGCAAACGGAGTCATGCTGGAAACTGCCTGGGCTGGGGCAGCATACAATCTGATGCTCTATACGCTAGCAAGTCATGTGATAGGAGCTTGTTGGTACCTCTTATCAACTGAAAGGCAAGGGGAGTGTTGGAAAAAAGCTTGTAGTGTCGAATACCCCCATTGTTACTATCATTATCTTGACTGTCGAAGTTTAAACAACCCTGGCAGAGCTGCTTGGCTGAAATCAAGTAACATCTCGAGCTTATGTGACGGGAACAATGAGTTCTTCGAGTTTGGCATCTATGGTGATGCATTTACTTCTGGAATCTTGACTTCGATGTTTTTCAGCAAGTACTACTACTGTCTATGGTGGGGACTAAGAAATCTCAGCTCCTTAGGGCAGAATCTCTTGACAAGCACCTATATCGGAGAAATTAATTTTGCTGTGGTTATAGCCATTCTTGGGTTGGTGTTGTTTGCTTTGCTCATTGGCAATATGCAAATGTATCTCCAGTCAACTACCATGAGACTAGAGGAATGGAGGATCAGAAGGACAGACACAGAGAGATGGATGCGTCACAGGCAGCTCCCTCCATACTTGAAGCAAAGCGTCCGAAGGTATGATCAGTACAGATGGGTGACAACTAGGGGGGTTGATGAGGAAAGCATCCTTACAGGCCTACCTTCAGATCTCAGACGCGACATCAAGCGCCATCTCTGCCTTGCATTGGTTCGACAAGTAAGTCTTAATACCTAA 1557 0.4252 MILDRKRKIRKLVCPCCAFCQGRDQYIYMVVQHVSLADEIRHSLKLQQRRSLSVMAPSRSRSVRFQYDVETAKHSPIRKSQSPMATFKKTHGKNEKELSRVFSEDYEVIEKMILDPRGPVVNRWNKVFLVACLISLFVDPLFFYLPVAKKEMCIDTSVPLEVYLTFIRSIVDAFYVVQIFLSFRIAYVAPSSHVFGRGELVIDPSEIASRYLRKDFWIHLLAALPLLQLLIWAAIPNVTGAEMIASRNVLPLFTIFQYLLRLYLIFPLSSRIIKANGVMLETAWAGAAYNLMLYTLASHVIGACWYLLSTERQGECWKKACSVEYPHCYYHYLDCRSLNNPGRAAWLKSSNISSLCDGNNEFFEFGIYGDAFTSGILTSMFFSKYYYCLWWGLRNLSSLGQNLLTSTYIGEINFAVVIAILGLVLFALLIGNMQMYLQSTTMRLEEWRIRRTDTERWMRHRQLPPYLKQSVRRYDQYRWVTTRGVDEESILTGLPSDLRRDIKRHLCLALVRQVSLNT* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01888 518 FunFam Cyclic nucleotide-gated ion channel 1 443 507 - -
Pte6g01888 518 Gene3D - 127 439 - -
Pte6g01888 518 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 89 516 - -
Pte6g01888 518 SUPERFAMILY cAMP-binding domain-like 446 516 IPR018490 -
Pte6g01888 518 Pfam Ion transport protein 124 443 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pte6g01888 518 PRINTS EAG/ELK/ERG potassium channel family signature 429 438 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pte6g01888 518 PRINTS EAG/ELK/ERG potassium channel family signature 411 422 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pte6g01888 518 PRINTS EAG/ELK/ERG potassium channel family signature 385 402 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pte6g01888 518 PRINTS EAG/ELK/ERG potassium channel family signature 479 486 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pte6g01888 518 PRINTS EAG/ELK/ERG potassium channel family signature 296 306 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pte6g01888 518 PRINTS EAG/ELK/ERG potassium channel family signature 168 178 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pte6g01888 518 PRINTS EAG/ELK/ERG potassium channel family signature 179 188 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pte6g01888 518 Gene3D Helix hairpin bin 443 507 - -
Pte6g01888 518 SUPERFAMILY Voltage-gated potassium channels 115 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01888 Pte-Chr6 35691295 35695285 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01888 96 516 Ion Channels AT2G28260 66.746 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01888 K05391 - qsa:O6P43_006661 706.827