Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01887 ATGTCGGCCTGTGCAGCTTCTATAGCTCTTCCATCTCTAAATCTCAACCTAGGAACTCAATCTCTCTGCAGTACAAAATCACCTATCTCCGATGCAGTTCGTTTCTCTGTCTCCTGCGGTTCTACCGGGCTTCGTTCTAAGCCCGTTGCCATTTCTTCTACTTGTGGTTCATTTCTCACTTCTGATAACAGAATGTGCTATCAGATACAGAATCCTTCTCCGTTCTCTCGTTTTGTGCGCAACGTCGCAGTGTCTTCTGATATCGAACAGGATGTCGACGTTTTCAACGACGAAGAAGACCAACCCTATTTCCCTCCTGAGTGCAAGCTATTCGTAGGTAACCTTCCTTTCAGTGTTGACAGTTCCCAGCTGGCTAGCTTGTTTGGAAACGCTGGAAATGTGGAGATGGTGGAGGTGATATATGACAAGACGACCGGAAGGAGCAGAGGTTTTGGTTTTGTGACAATGTCTAACTCTGAGGAAGTTGAAGCGGCTGCTCAACAGTTTAATGGCTATGAACTTGGAGGCAGGCCATTGCGGGTAAATTCTGGACCACCTCCACCTAAGAGAAACGATGCCCCTTCCAGAGGTGGCAGATATGGCGATTTCCCTTCAAGAGGAGGCAGATTTAGCGATGCCCCTTCTAGAGGTGCCAGCTTTGGTTCAAGTTTTGACAGTGGAAACCGTCTCTATGTGGGAAACCTTGCATGGGGTGTTGATAACGAGGCACTGGGAACCTTGTTTAGTGATGTAGGAAATGTTGTAGACGCCCAGGTCGTTTATGACAGGGACAGCGGCAGATCAAGGGGATTTGGCTTTGTGACTTTGAGTTCTGCTGAATCTGTCAATAAGGCTATTGAGTCCTTGGATGGAGTTGTAAGCATGCTGCAAACTAGCTCTTTTATATCTGCTTTTTCTATGTCTTTTTTATATTATTTTTGCTGCTATGCACTGTCATACCATAAGTTGCTTCTATTGATCGAAGTACTGTTAGTTCAAGGAATTCACGTTGTCTATTCAATTCATGCAAATGCTGATTCAACTATAAAAATCACTAATTGA 1062 0.4482 MSACAASIALPSLNLNLGTQSLCSTKSPISDAVRFSVSCGSTGLRSKPVAISSTCGSFLTSDNRMCYQIQNPSPFSRFVRNVAVSSDIEQDVDVFNDEEDQPYFPPECKLFVGNLPFSVDSSQLASLFGNAGNVEMVEVIYDKTTGRSRGFGFVTMSNSEEVEAAAQQFNGYELGGRPLRVNSGPPPPKRNDAPSRGGRYGDFPSRGGRFSDAPSRGASFGSSFDSGNRLYVGNLAWGVDNEALGTLFSDVGNVVDAQVVYDRDSGRSRGFGFVTLSSAESVNKAIESLDGVVSMLQTSSFISAFSMSFLYYFCCYALSYHKLLLLIEVLLVQGIHVVYSIHANADSTIKITN* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01887 353 Gene3D - 85 218 IPR012677 -
Pte6g01887 353 PANTHER OS02G0815200 PROTEIN 73 292 - -
Pte6g01887 353 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 186 IPR000504 GO:0003723
Pte6g01887 353 SMART rrm1_1 229 302 IPR000504 GO:0003723
Pte6g01887 353 SMART rrm1_1 109 182 IPR000504 GO:0003723
Pte6g01887 353 Gene3D - 219 299 IPR012677 -
Pte6g01887 353 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 291 IPR000504 GO:0003723
Pte6g01887 353 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 292 IPR000504 GO:0003723
Pte6g01887 353 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 180 IPR000504 GO:0003723
Pte6g01887 353 MobiDBLite consensus disorder prediction 175 212 - -
Pte6g01887 353 SUPERFAMILY RNA-binding domain, RBD 105 291 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01887 Pte-Chr6 35687249 35690154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01887 108 306 Eukaryotic Initiation Factors Gene Family AT4G34110 27.136 1.74e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01887 - - cpap:110811207 295.049