Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01882 ATGGGAGGAATGAAGTGTTTCCTATTTTACATTGGGGAGAAGAAGGAAGAACAAAAGTTCATGAAGCCAAGTTTTGCCCACTCCAATTCAGCACATGTTGATTTCGAAATGAGATTGTCTGGTTCTGAGTTGAATTCTCTCGATGCTTCAGATGCTAGCACAGAATCCTCGAGAAGGAATTCATATCCATGTTTGTCTCAAAGATCCAGCAACCTGAAAGAGTATACTGTTTCCGAACTCAAATCAGCCACAAAAAATTTCAGCCGGTCTGTTATGCTTGGAGAGGGCGGGTTTGGATGTGTCTACAAGGGCTTGATAAGGAGTCCAGAAAATCCGTCTAGGAAGGTCGAAGTTGCAGTTAAACAACTTGGTAAAAGAGGAATTCAGGGTCACAAGGAATGGGTGACAGAAGTCAATGTTTTAGGGATTGTTGAGCATCCTAATCTTGTGAAATTAGTTGGCTACTGTGCTGAAGATGATGAAAGAGGTATACAACGGCTCCTTGTTTATGAATATATGCCTAACAGAAGTGTCGAACACCACTTGTCACGTCGATCAGATACTTCTCTTCCATGGATTAGGAGATTGAAAATAGCTCAAGATACAGCTTGCGGTTTAACTTACTTGCACGAACAGATGGACTTTCAGATAATTTTCAGAGATTTCAAATCCTCAAATATACTATTGGATGAGCACTGGAATGCAAAGCTATCAGATTTTGGGTTGGCAAGGTTGGGCCCCTCAGAAGGATTAACTCATGTTTCAACAGCGGTTGTAGGAACAATGGGATATGCCGCTCCAGAATATGTTCAAACTGGACGGCTCAATGCCAAGAGTGATGTATGGAGCTATGGCGTCTTCCTCTATGAGCTCATCACTGGCAGGCGTCCTCTGGATCGGAATCTTCCAAAGGGTGAACAGAAGCTCTTGGAATGGGTAAAGCCATACCTATCAGATGGTAGGAGATTCCAATTAATAATGGATCCAAAGCTTGAAGTAAAAAGGTATCTTAAATCAGCACAAAGACTCTCAGTTGTAGCCAACCGGTGCCTGGTCAGACAACCAAAGAACCGTCCAAAAATGAGTGAAGTGTTGGAAATGGTAAATCGGATTGTAGAGTCATCACTAGACATTGGAGGTCCGGAGCTGCCTCTGAAGGGCTTTCCCTCAATGGAAACTTCGGAGAATGCCAAACTGAACAACAAAAGAAGGATCATTGATGTAAAACCTGGGGAAAATAGTTGGTTTGCTCGGATATGGAGGCCAAAATTATTGAGATCACGCTGA 1287 0.4274 MGGMKCFLFYIGEKKEEQKFMKPSFAHSNSAHVDFEMRLSGSELNSLDASDASTESSRRNSYPCLSQRSSNLKEYTVSELKSATKNFSRSVMLGEGGFGCVYKGLIRSPENPSRKVEVAVKQLGKRGIQGHKEWVTEVNVLGIVEHPNLVKLVGYCAEDDERGIQRLLVYEYMPNRSVEHHLSRRSDTSLPWIRRLKIAQDTACGLTYLHEQMDFQIIFRDFKSSNILLDEHWNAKLSDFGLARLGPSEGLTHVSTAVVGTMGYAAPEYVQTGRLNAKSDVWSYGVFLYELITGRRPLDRNLPKGEQKLLEWVKPYLSDGRRFQLIMDPKLEVKRYLKSAQRLSVVANRCLVRQPKNRPKMSEVLEMVNRIVESSLDIGGPELPLKGFPSMETSENAKLNNKRRIIDVKPGENSWFARIWRPKLLRSR* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01882 428 Pfam Protein tyrosine and serine/threonine kinase 92 366 IPR001245 GO:0004672|GO:0006468
Pte6g01882 428 FunFam Serine/threonine-protein kinase PCRK2 173 382 - -
Pte6g01882 428 Gene3D Phosphorylase Kinase; domain 1 67 172 - -
Pte6g01882 428 FunFam Serine/threonine-protein kinase BIK1 53 172 - -
Pte6g01882 428 PANTHER OS01G0588500 PROTEIN-RELATED 55 370 - -
Pte6g01882 428 SUPERFAMILY Protein kinase-like (PK-like) 60 368 IPR011009 -
Pte6g01882 428 CDD STKc_IRAK 93 371 - -
Pte6g01882 428 ProSiteProfiles Protein kinase domain profile. 87 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte6g01882 428 Gene3D Transferase(Phosphotransferase) domain 1 173 378 - -
Pte6g01882 428 ProSitePatterns Protein kinases ATP-binding region signature. 93 121 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01882 Pte-Chr6 35660683 35664061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01882 4 365 Glycoside Hydrolase AT3G07070 42.234 4.97e-87 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pte6g01882 PK_Tyr_Ser-Thr 8.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01882 - - qsa:O6P43_010275 674.855