Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01875 ATGGGCGGAAAGTGTCCACACAGGAGCGTGAAGAAAAGAAGATACTCTCACAAGACTGCTCGTCGCACTAAATTCCTTACCAAAGGGGATGATATGGTGTATGATGAGATAAAAAACACTGATCAGGAGAGGAAACCCTTGCCTTTTGATGAAGATTTGCCTGGAATGGGCCAATACTACTGCTTGATCTGCGACCGATATTTTTCCAATGTGGCGGTAAGGGATGAACATTTTAAGAGCAAACGTCACAAGAAACGTGCAAAACAGATGATGGGGCCTGCGCCACACTCTCAACTTGATGCAGACCTAGCAGGTGGCTTGGGTAAGCCAGATAATGGACCAAAGCTTATGTCAATGTGA 360 0.4556 MGGKCPHRSVKKRRYSHKTARRTKFLTKGDDMVYDEIKNTDQERKPLPFDEDLPGMGQYYCLICDRYFSNVAVRDEHFKSKRHKKRAKQMMGPAPHSQLDADLAGGLGKPDNGPKLMSM* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01875 119 PANTHER EXPRESSED PROTEIN 1 119 - -
Pte6g01875 119 SMART ZnF_U1_5 56 90 IPR003604 GO:0003676|GO:0008270
Pte6g01875 119 SUPERFAMILY beta-beta-alpha zinc fingers 46 104 IPR036236 -
Pte6g01875 119 ProSitePatterns Zinc finger C2H2 type domain signature. 61 83 IPR013087 -
Pte6g01875 119 MobiDBLite consensus disorder prediction 1 22 - -
Pte6g01875 119 MobiDBLite consensus disorder prediction 79 119 - -
Pte6g01875 119 ProSiteProfiles Zinc finger matrin-type profile. 59 89 IPR000690 GO:0003676|GO:0005634|GO:0008270
Pte6g01875 119 Pfam Zinc-finger double-stranded RNA-binding 58 84 IPR022755 -
Pte6g01875 119 Gene3D Classic Zinc Finger 46 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01875 Pte-Chr6 35604622 35606676 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01875 3 118 C2H2 Transcription Factor Family AT2G36930 74.138 7.65e-61 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01875 K14821 - qsa:O6P43_010258 222.631