Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01873 ATGGCAACTTGCTACAACTCCCAAACTCAAATATACTCTTCTCCCAGATCACCCATTCAGTTCCCCACTGATCCTGATCTCTCACTGACTTCCTTCCTCTTTAAAACCTCATCTCCGTACGCCAATGCACTTGCACTCGTCGATACTGATTCCGGCGAGTGCTTAACGTTTCATCAGCTCCAACTCCAAGTCTCCAAGCTTTCACACGCTTTGCTCCGTCTCCAAATCAGCAAAGGTGACGTGGTTCTTCTGTTTGCTCCTAATTCAATTCAATATCCCATATGCTTCCTAGCTATCGTGGCTATTGGTGCCGTCTTTACTTCTTGCAATCCTATGTACACCTTCAGTGAGCTAGCAAAGCAAGTTGAAGACTCTAAGCCAAAACTCATCATAACTGTGCCAGAATTTCATGCTGACAAAATTCAACCAATGGGATTGCCTACAATCTTGCTCGGTACTCATTCAACGTCCATCACTTCAAGATTGAACAGTTCGAAAATTTGGTCTTACTCGGATTTGATCAGAACACTTCCAAATGATGAAATTTCTGGTCATAACTTGCCTCTGGTTCATGTTAGACAGACCGATGTGGCTGCTTTATTCTATTCATCAGGGACGACAGGTGTCAGCAAAGGAGTCATTTTGACTCATAAGAATTTCATATCAGCATCGTTGATGATTACGGTGGATCAGGATCAGTATCGAGAAGCGAAGAATGTGTTCCTTTGTTTCTTGCCCATGTTTCATATGTTCGGCCTATCTGCGGTTGTGTATGCACAGTTGGTGCGGGGCAATACTGTGGTATCGATGAAGAAATTTGAGTTAGATAAGGTTTTGGAGGCAGTGGAAAAGTTTAAGGTTACCCATCTCTATGTTGTTCCTCCAGTTATTATAGCAATGACCAAGAACCGTGAAATCATGAACTTGTATGACTTGTCCTCACTGAATCAAATTCTATCTGCTGCTGCACCTCTGGGGAGAGATGTGATGGAGGATTGTGCTAACATACTCCCTCACGTTGACATCATCCAGAGTTATGGTATGACCGAATCATGTGGAGCCATTTCAGTTGAAAATCCAAGGCAAGAACCTCGTCTTTCTGGTTCAACTGGAACTCTCGTCCCCGGATTAGAGGCCCAGATAGTAAGTGTGAGCACATCCAAGCCACTGCCACCAAATCAACTTGGAGAAATATGCATTCGTGGACCTAGTATGATGCAAGGGTACCTAAACAAACCAGAAGCCACAAAGCTAACTATCGATGATCAAGGCTGGGTACACACCGGCGACCTTGGTTATTTTAACCAAGAGGGACAACTCTTTGTGGTTGATCGGATCAAAGAGCTCATTAAATGTTATGCGTATCAGGTAGCCCCAGCAGAAATAGAAGGTCTTCTTCTTTCTCATCCTGAAATAATAGATGCCGTTGTAGTACCGTTCCCAGACGACAAAGCTGGTGAGGTCCCCATCGCATACGTGGTTCGAGCACACCATAGCCTGTTAACAGAAAATGAAGTCAAGAATTTTATAGCAAAACAGGTTGCACCGTTCAAGAGACTACGACATGTATCCTTTATACGCAGTGTTCCCAAGTCGGCCTCAGGTAAAATTTTAAGAAGAGAGCTGAGAAATTCTGATCCTCAACACTTGACACCAAGGTTGTGA 1665 0.4384 MATCYNSQTQIYSSPRSPIQFPTDPDLSLTSFLFKTSSPYANALALVDTDSGECLTFHQLQLQVSKLSHALLRLQISKGDVVLLFAPNSIQYPICFLAIVAIGAVFTSCNPMYTFSELAKQVEDSKPKLIITVPEFHADKIQPMGLPTILLGTHSTSITSRLNSSKIWSYSDLIRTLPNDEISGHNLPLVHVRQTDVAALFYSSGTTGVSKGVILTHKNFISASLMITVDQDQYREAKNVFLCFLPMFHMFGLSAVVYAQLVRGNTVVSMKKFELDKVLEAVEKFKVTHLYVVPPVIIAMTKNREIMNLYDLSSLNQILSAAAPLGRDVMEDCANILPHVDIIQSYGMTESCGAISVENPRQEPRLSGSTGTLVPGLEAQIVSVSTSKPLPPNQLGEICIRGPSMMQGYLNKPEATKLTIDDQGWVHTGDLGYFNQEGQLFVVDRIKELIKCYAYQVAPAEIEGLLLSHPEIIDAVVVPFPDDKAGEVPIAYVVRAHHSLLTENEVKNFIAKQVAPFKRLRHVSFIRSVPKSASGKILRRELRNSDPQHLTPRL* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01873 554 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 6 544 - -
Pte6g01873 554 Pfam AMP-binding enzyme 39 452 IPR000873 -
Pte6g01873 554 Pfam AMP-binding enzyme C-terminal domain 461 536 IPR025110 -
Pte6g01873 554 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 447 - -
Pte6g01873 554 CDD 4CL 21 542 - -
Pte6g01873 554 Gene3D - 10 447 IPR042099 -
Pte6g01873 554 ProSitePatterns Putative AMP-binding domain signature. 200 211 IPR020845 -
Pte6g01873 554 Gene3D - 448 547 IPR045851 -
Pte6g01873 554 SUPERFAMILY Acetyl-CoA synthetase-like 18 545 - -
Pte6g01873 554 FunFam 4-coumarate--CoA ligase 2 448 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01873 Pte-Chr6 35599412 35602320 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01873 11 542 Monolignol Biosynthesis Gene Families AT4G05160 59.211 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01873 K01904 - qsa:O6P43_006628 776.933