Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01870 ATGGGAAGGGCTCCCTGTTGTGATAAAGCTAATGTGAAGAAGGGGCCATGGTCTCCCGAGGAAGATGCAAAACTAAAAGAGTACATAGAGAAACATGGGGCAGGAGAGAATTGGATTGCTCTTCCCCACAAAGCCGGTCTAAGAAGATGTGGAAAAAGCTGTAGATTGAGATGGCTTAACTATCTTAGACCCAACATTAAACATGGCGAGTTCTCTGAGGAAGAAGATAAGATCATTTGCAGTCTCTATGTTAGCATAGGAAGCAGATGGTCTATTATAGCAGCTCAGTTACAAGGGAGAACTGACAATGATATCAAGAACTACTGGAACACCAAGCTCAAGAAAAAACTAATGAGCGGCACGATTGCTCTCCCACAGAGGAAACTTCAAGGAGTCACCTTCAAATCATCAGCTACATCGTCATCAACTTCACCACCTTCATTCGAAGACAGAAATGACACTTATAACAAGCTAGAGACATTTCAAACAACCCCAATTTCCATTTCATTCTCTTCAAATCTCTTGAGGTGCCCTTCTTCCAGTCCTGCAAACTCATTCATTCAAGAGAGTTATGCAGGTGATTTTCCTAATTATCAAGTTAAAGAGAACCGCTTCATGTTTGGGGTTCACGAACCTAGTAGCTCTTCTGATGGAAGCTGCAGCAACCAGATAGGCCTAGGCCAAGGCCAAGGTGCAGAATATGAATATGCAGCATGCGGTGGTGGGATCAAAGTTGAGCAAATGAATGTGCAGAACTGTTTGAAAAGAGGGATTCAAGAGAGCCAAAAATTCATGCATTTAAATGGGTGTACTGATAGACAAAATGGGTTGTGGGGAGAAAACCCAGCAGAATATGAATATGGCCTAGAAGATATTAAACAGCTACTAAGCACGAATAGCTGTAACACCTTTATGTTTGATGAAAACAAGACAGGAGAAAGTGGCTTGTACTACTACTGA 960 0.4208 MGRAPCCDKANVKKGPWSPEEDAKLKEYIEKHGAGENWIALPHKAGLRRCGKSCRLRWLNYLRPNIKHGEFSEEEDKIICSLYVSIGSRWSIIAAQLQGRTDNDIKNYWNTKLKKKLMSGTIALPQRKLQGVTFKSSATSSSTSPPSFEDRNDTYNKLETFQTTPISISFSSNLLRCPSSSPANSFIQESYAGDFPNYQVKENRFMFGVHEPSSSSDGSCSNQIGLGQGQGAEYEYAACGGGIKVEQMNVQNCLKRGIQESQKFMHLNGCTDRQNGLWGENPAEYEYGLEDIKQLLSTNSCNTFMFDENKTGESGLYYY* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01870 319 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pte6g01870 319 FunFam Transcription factor RAX3 7 68 - -
Pte6g01870 319 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Pte6g01870 319 SMART sant 67 115 IPR001005 -
Pte6g01870 319 SMART sant 13 64 IPR001005 -
Pte6g01870 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Pte6g01870 319 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pte6g01870 319 CDD SANT 16 62 IPR001005 -
Pte6g01870 319 Gene3D - 7 68 - -
Pte6g01870 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Pte6g01870 319 CDD SANT 70 113 IPR001005 -
Pte6g01870 319 Gene3D - 69 136 - -
Pte6g01870 319 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pte6g01870 319 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Pte6g01870 319 PANTHER OS09G0431300 PROTEIN 1 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01870 Pte-Chr6 35561577 35563538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01870 1 133 MYB Transcription Factor Family AT2G36890 79.699 2.88e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte6g01870 Myb_DNA-binding 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01870 K09422 - qsa:O6P43_010254 392.119