Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01862 ATGGCTGTTCCAGGAAGACGCAATGGAGAAGTAGAAGACGATCAAGACGATAACGCCCTCTTCGAAGATCATGATCATGATGAGTCCGCCAACGTTCCTCCTCATCTCCATGACCTCTTTCTGGCTGTTAAGGGGGGAGATGTCGCTGCCCTTCGTCATGCTCTAGATAATTTGTCTGGTGGTATTGATGAACCAGTGGAAGATGGTGACACAGCACTTCATCTAACCTGTCTATATGGCTACTTTTCGTGTGTCCAGCTGCTTTTGGAAAGAGGAGCAAATTTAGAGGTTAGGGATGAAGATGGTGCAATTCCCCTGCATGATGCATGTGCTGGAGGATATACAGAGATTGTACAACTTTTATTTAACAAAGCTACTAGCTCAGAGCAGATAAAAAGGATGCTAGAAACAGTGGATGCTGAAGGCGATACTCCTCTTCATCATGCAGCGAGAGGTCAGCATGTGGAGGTTATAAGATTGTTGTCAGCTGCTGGTGCTTCATGTACCCAGACAAACTTATTTGGACAGGTTAGCATCTAA 540 0.4537 MAVPGRRNGEVEDDQDDNALFEDHDHDESANVPPHLHDLFLAVKGGDVAALRHALDNLSGGIDEPVEDGDTALHLTCLYGYFSCVQLLLERGANLEVRDEDGAIPLHDACAGGYTEIVQLLFNKATSSEQIKRMLETVDAEGDTPLHHAARGQHVEVIRLLSAAGASCTQTNLFGQVSI* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01862 179 PANTHER SOWAH (DROSOPHILA) HOMOLOG 26 175 - -
Pte6g01862 179 ProSiteProfiles Ankyrin repeat profile. 101 133 IPR002110 GO:0005515
Pte6g01862 179 SMART ANK_2a 141 170 IPR002110 GO:0005515
Pte6g01862 179 SMART ANK_2a 101 130 IPR002110 GO:0005515
Pte6g01862 179 SMART ANK_2a 68 97 IPR002110 GO:0005515
Pte6g01862 179 MobiDBLite consensus disorder prediction 1 29 - -
Pte6g01862 179 ProSiteProfiles Ankyrin repeat profile. 141 173 IPR002110 GO:0005515
Pte6g01862 179 Pfam Ankyrin repeats (3 copies) 39 99 IPR002110 GO:0005515
Pte6g01862 179 Pfam Ankyrin repeats (3 copies) 101 172 IPR002110 GO:0005515
Pte6g01862 179 ProSiteProfiles Ankyrin repeat profile. 68 100 IPR002110 GO:0005515
Pte6g01862 179 SUPERFAMILY Ankyrin repeat 39 176 IPR036770 -
Pte6g01862 179 Gene3D - 106 178 IPR036770 -
Pte6g01862 179 ProSiteProfiles Ankyrin repeat region circular profile. 141 167 - -
Pte6g01862 179 FunFam BRCA1-associated RING domain protein 1 33 179 - -
Pte6g01862 179 Gene3D - 32 105 IPR036770 -
Pte6g01862 179 ProSiteProfiles Ankyrin repeat region circular profile. 68 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01862 Pte-Chr6 35506297 35508500 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01862 40 175 Ion Channels AT2G25600 30.000 4.02e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01862 - - gmx:100804303 254.603