Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01825 ATGAAGGTGGTTGCAGCTTATTTGTTGGCAGTATTGGGAGGTAACACCAGCCCTTCGGCTGAGGATCTCAAAGGCATTCTCGGTGCTGTTGGCGCAGATGCTGAAGAAGACAGGATAGAACTTTTGTTATCAGAAGTCAAGGGCAAGGATATAACAGAACTCATTGCTGCTGGAAGGGAGAAATTAGCATCCGTACCTTGTGGTGGTGGTGCTGGTGGTGCAGTTGCAGTGGCTGCCAGTGCCGGCGGTGCTGCTGTTGCTCCAGTTGCAGCTGAGTCAAAGAAAGAAGAAAAGGTGGAGGAGAAAGAGGAATCCGACGATGACATGGGCTTCAGTCTCTTCGATTAA 348 0.5 MKVVAAYLLAVLGGNTSPSAEDLKGILGAVGADAEEDRIELLLSEVKGKDITELIAAGREKLASVPCGGGAGGAVAVAASAGGAAVAPVAAESKKEEKVEEKEESDDDMGFSLFD* 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01825 115 Gene3D - 1 59 IPR038716 -
Pte6g01825 115 FunFam 60S acidic ribosomal protein P2 1 59 - -
Pte6g01825 115 Hamap 50S ribosomal protein L12 [rpl12]. 2 115 IPR027534 GO:0003735|GO:0005840|GO:0006414
Pte6g01825 115 Pfam 60s Acidic ribosomal protein 17 114 - -
Pte6g01825 115 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 115 IPR044076 GO:0002182|GO:0003735|GO:0022625
Pte6g01825 115 MobiDBLite consensus disorder prediction 87 115 - -
Pte6g01825 115 CDD Ribosomal_P2 1 115 IPR044076 GO:0002182|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01825 Pte-Chr6 35178979 35180443 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01825 1 116 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 65.517 1.08e-33 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01825 K02943 - ming:122089000 133.65