Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01809 ATGGAAGTTATGGAAAGCAATCTGGCTAGTTCTCCAAGAAACTCCGTGTCTGACTCACCTCCGACACCGTTGAGCTCCTCCGTGCCCAGTCAGACGATGAACGTGCCTCCGAGTATGAACTTGGGGAGCAGCGTTGAGGCAACGGCAACACCACCAATGACACAGATTATGGGAACAATGTCTGCACCAGCTGGAATTGGTGAAGGGGGGCCTGGAAGCTTGGTTGATTCGTTAAAGAAAAAGAAGAGGGGAAGGCCAAGGAAATATGATGCAGATGGGAACTTAAGTTCGGCCTATCTGCAGAGACAACGAGTTCAAGTGTCTCCACCACCTGGTATTTCTTTGTCACCTGCTATGCCATCCGAGTTTTCTTCCAAAAGGGGTCGAGGCAGGCCACCTGGCTCTGGCCACTGGCAGATTCTTGCATCTTTTGGTGAAATTTTTGCAAAAACTGCCTGTACTGACTTTACACCTCATGTGGTGTTCATTCGTGCTGGAGAGGATGCTGCAGGAAAGGTTTTTTCCTTTGTGCAGAAGGGTCAGAGAGGCGTATGTATTCTCTCAGCCATTGGAACTGTTTCAAGTGTAACCATTAGGCAAGCTGGTTCCCCTAATGGGATGCTGACGACATACGAGGGTCGCTTTGAGATCTTGTCTTTATCTGGATCATTTACAGTGACTGATACTGGTGGCATGAGAAGTGAAACTGGTGGTTTGAGTGTCTCTTTGGCCGGGCCTGATGGTCGAGTAATAGGAGGGTGCGTTGCTGGTTTATTGACTGCTGCTGGCCCCATTCAAGTATGTCTTCCTTGTTTCTGCTTACTGTTGGATTATTGA 837 0.4863 MEVMESNLASSPRNSVSDSPPTPLSSSVPSQTMNVPPSMNLGSSVEATATPPMTQIMGTMSAPAGIGEGGPGSLVDSLKKKKRGRPRKYDADGNLSSAYLQRQRVQVSPPPGISLSPAMPSEFSSKRGRGRPPGSGHWQILASFGEIFAKTACTDFTPHVVFIRAGEDAAGKVFSFVQKGQRGVCILSAIGTVSSVTIRQAGSPNGMLTTYEGRFEILSLSGSFTVTDTGGMRSETGGLSVSLAGPDGRVIGGCVAGLLTAAGPIQVCLPCFCLLLDY* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01809 278 ProSiteProfiles PPC domain profile profile. 153 278 IPR005175 -
Pte6g01809 278 PRINTS AT-hook-like domain signature 124 135 IPR017956 GO:0003677
Pte6g01809 278 PRINTS AT-hook-like domain signature 80 90 IPR017956 GO:0003677
Pte6g01809 278 SUPERFAMILY AF0104/ALDC/Ptd012-like 154 272 - -
Pte6g01809 278 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 37 272 IPR039605 GO:0003680
Pte6g01809 278 CDD DUF296 157 269 IPR005175 -
Pte6g01809 278 MobiDBLite consensus disorder prediction 1 135 - -
Pte6g01809 278 Gene3D - 158 273 - -
Pte6g01809 278 SMART AT_hook_2 126 138 IPR017956 GO:0003677
Pte6g01809 278 SMART AT_hook_2 80 92 IPR017956 GO:0003677
Pte6g01809 278 MobiDBLite consensus disorder prediction 96 110 - -
Pte6g01809 278 MobiDBLite consensus disorder prediction 7 57 - -
Pte6g01809 278 Pfam Plants and Prokaryotes Conserved (PCC) domain 158 269 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01809 Pte-Chr6 35055874 35058629 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01809 78 278 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 48.165 7.93e-52 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01809 - - qsa:O6P43_009509 291.967