Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01796 ATGGCCGTTCCTTCGACGATCGCCGCCGCTCCGGCATCTCTTTATGTCGGTGACCTTCACCCGGAAATCACCGATGGCCAGCTGTTTGATGCTTTCTCCGAGTTCAAGACTCTCGCGTCCGTACGTGTCTGTAGAGACTCTTCAACTGGCAGGTCACTCTGTTATGGTTACGTCAACTTCATAACTACACAAGACGCAACTCGGGCAATTGAGGTGAAGAATAATTCAGTGTTAAGGGGTAAAGTGATAAGGGTCATGTGGTCACATCGCGATCCAGATGCAAGGAAGAGCGGCATAGGGAATGTGTTTGTTAAGAACTTGCCTGAATCAATTGATAACTCTGGATTACAAGAACTGTTTAAAAATTTTGGCCATATTCTGTCTTGCAAAGTGGCTATGTATGATGATGGGAAGAGCAAGGGTCATGGCTTTGTCCAATTTGAAACCGAGGAATCTGCAAATGCTGCCATTGAAAAGATGAATGGTTTTGCTGTTGGAGACAAGCAAATATATGCAGGCAGGTTTATAAAGAAAACGGAGCGGTCTTCACCCAGTCCTGACATTAAATATACGAATTTGTACATGAAGAATTTGGATCCTGAAGTGGGGGAGGAACTTCTGCAAAAAACCTTTTCTTCTTTCGGGAAAATTGTTAGCTTGGCTGTTGCAAAGGATGAGAACGGTGCATCTAGAGGCTTTGGATTTGTAAACTTTGAGAATCCAGATGATGCTAGACAAGCAATGGAAGCCATGAATGGAGCACAACTTGGGTCAAAGATTTTGTATGTAGCAAGGGCACAAAAGAAAGCTGAGCGAGAGCAAATCTTGCGGCATCAGTTTGAGGAGAAGCGTAAGGAGCAAATGATGAAGTACAAGGGATCCAATCTTTATGTGAAGAACATTGCTGAGAGTGTTACTGATGAAGATCTAGAAAAGAACTTTACCATGTGTGGCACAATCACTTCTGCAAAACTTATGCGAGACAAAAACGGAAGTAGCAAGGGTTTTGGATTTGTATGTTTCTCCTCTCCTGAGGAGGCTAGTAAGGCTGTGAAGACTTTTCACGGTGCTATGTTCCATGGAAAACCCCTATATGTTGCTGTTGCTCAAAGGAAAGAGGAAAGGCAAGCACAACTGCAGCTTCAGTATGCTCAGCGTCTGCCTGCAGTAGCTGGACCTTCCACTGCTGTTATTGCTGGTGGCTATCCTCATTATTATTACACAGCACCTGGCGTGGTTTCTCAAGTGCCATCTCGACCAGGGATGCTTATTCAACCTCTGGGATTACGGCCTGGATGGACACCTAATGGTTTTGCATCTCCAGCTAGACCGTCCTTTCCATCTGTTAATGTTACTCCTAATAACCCAAGACAGTATAGACAAAACAGAGGCAGGGCGAGTGCGCATGCTGTTTCACAGGGTAATGCTCCAGCTTCATACATTCCCAACATGCAGCATTCCACTCAATCTGTGGCCTTTTCAAAAGAATCAACAGCAACTACTCGCCAGCGCACTGGGCATGCTAAGTATGTTCCAAATGCCCGCCAACATGAGATGGAGAAAGGATCTGGGTTCTCATATGCCGCCGCTTCCAATTATGTTGGAGGGTCACGGGGATCGCAAATGCTGCATAGCCATCTCGCTGCCGCTTCTCCGGAGGAACAGAAACAGATACTTGGCGAGCGTCTCTATCCTCTTGTGCACGAACACAAGCCTAACCTTGCGTCAAAGATTACGGGAATGCTCTTGGAGATGGATAACAGTGAGTTACTGCTTTTGTTAGAGTCACCAGAGGCTCTCTCGGCCAAGGTAGATGAAGCTGTGCATGTGCTAAAGAACTCCACTACAAAAGTATCTGGCCAAGATCCACTTCACACCAGCTTCCTGTCGGCTGAGGTTGCAGTAAACTGA 1911 0.46 MAVPSTIAAAPASLYVGDLHPEITDGQLFDAFSEFKTLASVRVCRDSSTGRSLCYGYVNFITTQDATRAIEVKNNSVLRGKVIRVMWSHRDPDARKSGIGNVFVKNLPESIDNSGLQELFKNFGHILSCKVAMYDDGKSKGHGFVQFETEESANAAIEKMNGFAVGDKQIYAGRFIKKTERSSPSPDIKYTNLYMKNLDPEVGEELLQKTFSSFGKIVSLAVAKDENGASRGFGFVNFENPDDARQAMEAMNGAQLGSKILYVARAQKKAEREQILRHQFEEKRKEQMMKYKGSNLYVKNIAESVTDEDLEKNFTMCGTITSAKLMRDKNGSSKGFGFVCFSSPEEASKAVKTFHGAMFHGKPLYVAVAQRKEERQAQLQLQYAQRLPAVAGPSTAVIAGGYPHYYYTAPGVVSQVPSRPGMLIQPLGLRPGWTPNGFASPARPSFPSVNVTPNNPRQYRQNRGRASAHAVSQGNAPASYIPNMQHSTQSVAFSKESTATTRQRTGHAKYVPNARQHEMEKGSGFSYAAASNYVGGSRGSQMLHSHLAAASPEEQKQILGERLYPLVHEHKPNLASKITGMLLEMDNSELLLLLESPEALSAKVDEAVHVLKNSTTKVSGQDPLHTSFLSAEVAVN* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01796 636 CDD RRM3_I_PABPs 190 269 - -
Pte6g01796 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Pte6g01796 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Pte6g01796 636 Coils Coil 263 283 - -
Pte6g01796 636 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 539 616 IPR002004 GO:0003723
Pte6g01796 636 FunFam Polyadenylate-binding protein 182 276 - -
Pte6g01796 636 CDD RRM4_I_PABPs 293 371 - -
Pte6g01796 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 183 IPR000504 GO:0003723
Pte6g01796 636 SMART rrm1_1 13 86 IPR000504 GO:0003723
Pte6g01796 636 SMART rrm1_1 192 264 IPR000504 GO:0003723
Pte6g01796 636 SMART rrm1_1 295 367 IPR000504 GO:0003723
Pte6g01796 636 SMART rrm1_1 101 173 IPR000504 GO:0003723
Pte6g01796 636 FunFam Polyadenylate-binding protein 4 96 - -
Pte6g01796 636 CDD RRM2_I_PABPs 98 174 IPR045305 -
Pte6g01796 636 Pfam Poly-adenylate binding protein, unique domain 547 611 IPR002004 GO:0003723
Pte6g01796 636 SUPERFAMILY PABC (PABP) domain 503 623 IPR036053 GO:0003723
Pte6g01796 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Pte6g01796 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Pte6g01796 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Pte6g01796 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 260 IPR000504 GO:0003723
Pte6g01796 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Pte6g01796 636 Gene3D - 275 382 IPR012677 -
Pte6g01796 636 SUPERFAMILY RNA-binding domain, RBD 13 180 IPR035979 GO:0003676
Pte6g01796 636 SUPERFAMILY RNA-binding domain, RBD 183 278 IPR035979 GO:0003676
Pte6g01796 636 Gene3D - 101 172 IPR012677 -
Pte6g01796 636 Gene3D - 176 274 IPR012677 -
Pte6g01796 636 FunFam Polyadenylate-binding protein 97 181 - -
Pte6g01796 636 Gene3D - 537 627 - -
Pte6g01796 636 SMART poly_2 551 614 IPR002004 GO:0003723
Pte6g01796 636 SUPERFAMILY RNA-binding domain, RBD 289 382 IPR035979 GO:0003676
Pte6g01796 636 Gene3D - 5 100 IPR012677 -
Pte6g01796 636 PANTHER OS02G0815200 PROTEIN 279 486 - -
Pte6g01796 636 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 12 612 IPR006515 GO:0003723
Pte6g01796 636 SMART rrm2_1 192 264 IPR003954 GO:0003676
Pte6g01796 636 SMART rrm2_1 295 367 IPR003954 GO:0003676
Pte6g01796 636 SMART rrm2_1 101 173 IPR003954 GO:0003676
Pte6g01796 636 SMART rrm2_1 13 86 IPR003954 GO:0003676
Pte6g01796 636 FunFam Polyadenylate-binding protein 537 622 - -
Pte6g01796 636 FunFam Polyadenylate-binding protein 277 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01796 Pte-Chr6 34995206 35000218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01796 12 634 Eukaryotic Initiation Factors Gene Family AT2G36660 52.623 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01796 K13126 - qsa:O6P43_010206 899.812