Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01785 ATGCACGTCATGAAACGAGAATTGGATTCCGTTGCGTTGGAACTTCACTCCGTTGATTCGGTCCCTCCTACTCTTACTGGAGTTTCAGACACTGTAGCTTCTCAGACCGAGTCAGAACCACCGGATTCCGAGACTAGGAGCTGCAAGAGATTCAAAGGGTCCATAGTAAATGGTTATATCGTGTATTCAAGGAAGTCACGAGTTGGCGCGTGTAATGGAATTTTTTATAATGAGAAAAGTAAGAGAATTTTGATCTCTGGTAGGCCTAAGATTTATGGCCACTTATCTGCTGGCTGTGATGCTGTAAAAGAAGCACGGTTAGAAAATGTAGTTCCGAATGGACAAAATTGCCAATCTCTGTGTTTGGATGAGCCAAAAAGAGAGCAATTACAAACTCAGGAGGAAGAAGCTATATTCAAAGTAGAAGAGAAGCCGGTAATTGGACTTGGTCATAAGCCTCCTAATGACGAACAGAATGGATTGCCGCCGATAAGGATACTTGGGCGATACAGGACTAAACGGAAGATCGAGTCCATAAGGGCTATATTAAGTGAACCAGAGCCTGTAGTTAATGATAATTCAACAACGTCAAGCAAGCTTGCCTTCAACAGGAAGCCTATGACTTGCAAGGAGCTTTTTGACACTGGTTTACTTGATGGTGTTCCGGTCGTTTACATGGGTGGCAAGAAGGCATCCGGTCTGCGTGGGATCATCAGAGATGGGGGTATTCTTTGCTCGTGTTCTTTCTGCAATTGGCGCTGTGTTATCCCGCCTTCCCAGTTTGAGATTCATGCTTGTAAAGCATATAGACGAGCAGCACAATATATTTGCCTTGAGAACGGGAAGAGTCTTCTTGAGTTATTGAGAACCTGCCGAGGGGCACCACTGCAAGCGTTGGAGTCAACAGTTCAGAAAGTCCTTTCCTCACCACCTGAAGAAAAATACTTTACATGTAAAAGATGCCGAGTATCATTCCCTCCTGCTTGTGTGACAAGAGTGGGATCCATGTGTGATTCTTGTGCTGAGGCAGAGAAATCTCAAGTCAGCCTGATTGATACTGACGGCATTTATACTAGATCGTCAGAGCCACTATTAATCTCAAAGACCTCCAGCAGTTCTATGCTGCCAATGTCCCCACAAATTAATATTCCTTTGAAGACTAGAGAGAAGTCGTTAAAACTGTTCAACACATCAAAGTCCTCAGAAGGTGCTCCTGTGACTCTTCCATCTCAAAAGAAGCGTCTGTGGAAGACAAAGAATAAGTCATCTAAAACGACTATAAGGTTGAAGTCATCAAAAAATAGTTTGACTTCTTCACAAACTAAAAGTCCATGGAAAATTACTAGAAAGCACCAGCGGTTGCATAGATTAGTTTTTGAGGAGGATGGATTGCCTGACGGAACAGAAGTAGCCTATTATGCACGTGGCCAGAAACTGCTTGTGGGTTACAAAAGGGGGTCTGGAATACTTTGCCGTTGCTGCAATTGTGAGGTTAGCCCCTCACTGTTTGAAGCTCATGCAGGATGGGCTTCTCGCAGGAAACCGTATGCATACATCTACACTTCAAATGGGGTTTCCTTACACGAATTAGCTATCTCTCTCTCTAGAGGTCGCAAGTTCTCTGCGAAGGACAATGATGACCTGTGCATAATTTGTTGGGACGGTGGAAATCTGGTGCTTTGTGATGGATGCCCAAGGGCATTCCATAAAGAATGTGCATCTTTACCTAGTATTCCTCGTGGTGACTGGTATTGTCAATACTGCCGGAATATGTTTGAGAGGGAAAAGTTTTTGGCAAACAATGCCAATGCTGTTGCTGCTGGAAGGTTTTTAGGAGTGGATCCCATAGAGCAAATGAGCAAAAGATGTATTCGTATTGTGAAAGACATTGAAACTGAGCTTAGTGGATGTGTTTTATGCAGGGGGTATGACTTCAGTAAATCAGGATTTGGTCCTCGGACTATCATACTTTGTGACCAGTGCGAGAAGGAATATCACATCGGCTGTTTAAGAGATCATAAAATGGCATTTCTAAAGGAATTGCCAAGAGGAGAGTGGTTTTGTACCCCTGATTGCTCGAGAATAAATACTACCTTGAACAAAATGCTGGTTCGAGGAGCAGACAAACTTCCAGACTTTCTATTATATGTAATAAAGCAGAAGATGGAAGAGAGAGGTTTAGAGAATTTGGACAATTGTGATGTTAGATGGAGACTTCTTCATGGAAAAATTGCTTCTCCCGAGACCAGGCCTTTGCTTTCAGAGGCTGTGTCCATCTTCCATGGATGTTTTGATCCTATAGTTGATTCAATGAGTGGACGTGATCTTATTCCAGCAATGGTTTATGGGAGGACTATAAGGGGCCAGGAATTTGGCGGAATGTACTGTGCAATATTAATGGTGAACTCAATTGTTGTGTCTGCTGGACTTTTTCGAGTTTTTGGCAGAGATATCGCTGAACTACCATTAGTTGCTACACGTAGTGGTGAGCACGAGAAGAAAATGTATGTATTTACATAG 2520 0.4306 MHVMKRELDSVALELHSVDSVPPTLTGVSDTVASQTESEPPDSETRSCKRFKGSIVNGYIVYSRKSRVGACNGIFYNEKSKRILISGRPKIYGHLSAGCDAVKEARLENVVPNGQNCQSLCLDEPKREQLQTQEEEAIFKVEEKPVIGLGHKPPNDEQNGLPPIRILGRYRTKRKIESIRAILSEPEPVVNDNSTTSSKLAFNRKPMTCKELFDTGLLDGVPVVYMGGKKASGLRGIIRDGGILCSCSFCNWRCVIPPSQFEIHACKAYRRAAQYICLENGKSLLELLRTCRGAPLQALESTVQKVLSSPPEEKYFTCKRCRVSFPPACVTRVGSMCDSCAEAEKSQVSLIDTDGIYTRSSEPLLISKTSSSSMLPMSPQINIPLKTREKSLKLFNTSKSSEGAPVTLPSQKKRLWKTKNKSSKTTIRLKSSKNSLTSSQTKSPWKITRKHQRLHRLVFEEDGLPDGTEVAYYARGQKLLVGYKRGSGILCRCCNCEVSPSLFEAHAGWASRRKPYAYIYTSNGVSLHELAISLSRGRKFSAKDNDDLCIICWDGGNLVLCDGCPRAFHKECASLPSIPRGDWYCQYCRNMFEREKFLANNANAVAAGRFLGVDPIEQMSKRCIRIVKDIETELSGCVLCRGYDFSKSGFGPRTIILCDQCEKEYHIGCLRDHKMAFLKELPRGEWFCTPDCSRINTTLNKMLVRGADKLPDFLLYVIKQKMEERGLENLDNCDVRWRLLHGKIASPETRPLLSEAVSIFHGCFDPIVDSMSGRDLIPAMVYGRTIRGQEFGGMYCAILMVNSIVVSAGLFRVFGRDIAELPLVATRSGEHEKKMYVFT* 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01785 839 MobiDBLite consensus disorder prediction 24 47 - -
Pte6g01785 839 MobiDBLite consensus disorder prediction 427 445 - -
Pte6g01785 839 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 633 695 - -
Pte6g01785 839 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 535 612 - -
Pte6g01785 839 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 535 612 IPR013083 -
Pte6g01785 839 Pfam Tify domain binding domain 482 532 IPR032308 -
Pte6g01785 839 Pfam Tify domain binding domain 236 291 IPR032308 -
Pte6g01785 839 MobiDBLite consensus disorder prediction 24 41 - -
Pte6g01785 839 ProSitePatterns Zinc finger PHD-type signature. 549 588 IPR019786 -
Pte6g01785 839 SMART PHD_3 636 693 IPR001965 -
Pte6g01785 839 SMART PHD_3 548 589 IPR001965 -
Pte6g01785 839 ProSiteProfiles Zinc finger PHD-type profile. 546 591 IPR019787 -
Pte6g01785 839 SUPERFAMILY FYVE/PHD zinc finger 629 693 IPR011011 -
Pte6g01785 839 PANTHER AUTOIMMUNE REGULATOR 123 833 - -
Pte6g01785 839 CDD PHD1_AIRE 548 588 - -
Pte6g01785 839 MobiDBLite consensus disorder prediction 417 445 - -
Pte6g01785 839 Pfam PHD-finger 549 590 IPR019787 -
Pte6g01785 839 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 633 695 IPR013083 -
Pte6g01785 839 SUPERFAMILY FYVE/PHD zinc finger 542 594 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01785 Pte-Chr6 34940198 34948839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01785 205 836 PHD Transcription Factor Family AT2G36720 55.778 0.0 734
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte6g01785 TDBD 5.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01785 - - qsa:O6P43_006593 974.926