Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01781 ATGTCTGGCGGCGGCGCTGGAGCATCGGAACACCGCCCGCCGCCACCTCCAGCATCTGTCGTGGGTCAGTCTCGGCCACCATCGAGGCGTCATCTATCTTTCGCATCGACTAAACCGCCTTTTGTTCAACCAGAGGACTATCATCGTTTCTCTACTTCTGATTCCAGTAGAGTTTCCGATCAAGCCGAAGCCATTGTTGTTAGATCTCCTCTTTTGAAGCGGAAAAGTGGAATAGAAACCAACGGTATGCAGTCTATTGAGCGGAATAGTGGTTCTGTTTATACTACTGCTATTGACAGTCCTCTCAAGACTCCTGTTTCTGCAAAAGGTTCAAGGGCATACAATAAGTCAAAAACTCCCAAGGAACCAAGATCAGGGTCCCAGACACCAATCTCAAATGCTGGTTCTCCTTCTCCTCTTACTCCTGCTGGCAGCTGTCGATATGATAGTTCCTTAGGTCTCTTAACCAAAAAGTTCATCAGTTTGCTGAAGCATGCAGAGGGTGGTATTCTTGATCTAAACAAAGCAGCAGAGACCTTGAACGTCCAGAAGAGGAGGATATATGACATAACTAATGTCCTGGAAGGCATTGATCTCATTGAGAAGAAACTCAAAAATAGAATACATTGGAAGGGACCTGAGTCTTCAAGACCAGGTGCATTGGATGCCGATTGCTCCATACTGAAGGATGAAGTTGATAAACTCTCCCTAGAAGAACAACATTTAGATAATCAGACAAGGGAAATGCAGGAAAAATTGCGGAGTTTGAGTGAAGACGAAAGCAACCAGAAGTGGCTTTTTGTAACTGAAGAAGACATCAAGGGAATACCCTGCTTCCAGAATGAGACTTTGATAGCAATCAAAGCCCCACACGGAACCACTTTGGAAGTCCCTGATCCCGATGAAGCTGTTGATTATCCTCAGAGAAGATACAGGATAATCCTTAGAAGCACAATGGGTCCTATTGATGTTTACTTGGTCAGCCAGTTTGAGGAGAAATTTGAAGAAATGAGCGGAGGAGAGCCTTCAACGAGCTTCCCAGTTGCTTCTAGTTCAGGGTCCAATGACAACCCATCAATGGAAGTGGTTGCAGTGAGGAGCAGTGGAGATGGAATTGAACATCAAGCCCATTCTCATGATATGCACTTGGATATAAATGCTTCACAAGAATTGGCTGGTGGAATGATGAAGATTCTTCCTGCAGATGTGAATAATGATGAAGATTACTGGCTCATGTCAGATATCGATTGCAGTATTACACAAATGTGGAGAACGGATTGTATCCAATTTTTGATTCATAATTGTCTGAATGCTTCACATTTTTTAACAGTCGTTATTTCTCGTTTCTCTCCATTCCATGCATTGAGTACGTTGTTTAATACCTTGACTTTAAATTCAGCTGGCGTTGATTGGAATGTGGCGGATATGCTTAATGCTGACTTTGGAATACCCGATATCAGTATTCCTAGACCTCAAACTCCATCTGGGGTTGCAGGAGTGCCCTCTACAGCAATCAACTCGAATCAAAATTGA 1533 0.4371 MSGGGAGASEHRPPPPPASVVGQSRPPSRRHLSFASTKPPFVQPEDYHRFSTSDSSRVSDQAEAIVVRSPLLKRKSGIETNGMQSIERNSGSVYTTAIDSPLKTPVSAKGSRAYNKSKTPKEPRSGSQTPISNAGSPSPLTPAGSCRYDSSLGLLTKKFISLLKHAEGGILDLNKAAETLNVQKRRIYDITNVLEGIDLIEKKLKNRIHWKGPESSRPGALDADCSILKDEVDKLSLEEQHLDNQTREMQEKLRSLSEDESNQKWLFVTEEDIKGIPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIILRSTMGPIDVYLVSQFEEKFEEMSGGEPSTSFPVASSSGSNDNPSMEVVAVRSSGDGIEHQAHSHDMHLDINASQELAGGMMKILPADVNNDEDYWLMSDIDCSITQMWRTDCIQFLIHNCLNASHFLTVVISRFSPFHALSTLFNTLTLNSAGVDWNVADMLNADFGIPDISIPRPQTPSGVAGVPSTAINSNQN* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01781 510 MobiDBLite consensus disorder prediction 1 69 - -
Pte6g01781 510 SUPERFAMILY "Winged helix" DNA-binding domain 147 210 IPR036390 -
Pte6g01781 510 FunFam E2F transcription factor 1 141 214 - -
Pte6g01781 510 MobiDBLite consensus disorder prediction 343 359 - -
Pte6g01781 510 SUPERFAMILY E2F-DP heterodimerization region 225 329 IPR037241 -
Pte6g01781 510 Pfam E2F transcription factor CC-MB domain 228 328 IPR032198 GO:0046983
Pte6g01781 510 Pfam E2F/DP family winged-helix DNA-binding domain 149 212 IPR003316 GO:0005667|GO:0006355
Pte6g01781 510 CDD E2F_DD 228 329 IPR032198 GO:0046983
Pte6g01781 510 MobiDBLite consensus disorder prediction 102 142 - -
Pte6g01781 510 Coils Coil 232 262 - -
Pte6g01781 510 Gene3D - 141 213 IPR036388 -
Pte6g01781 510 MobiDBLite consensus disorder prediction 336 359 - -
Pte6g01781 510 Gene3D - 220 329 - -
Pte6g01781 510 MobiDBLite consensus disorder prediction 110 142 - -
Pte6g01781 510 SMART E2F_TDP_2 147 212 IPR003316 GO:0005667|GO:0006355
Pte6g01781 510 PANTHER TRANSCRIPTION FACTOR E2F 74 429 IPR015633 GO:0000978|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01781 Pte-Chr6 34912382 34916794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01781 26 507 E2F-DP Transcription Factor Family AT2G36010 51.889 1.56e-155 450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Pte6g01781 E2F_CC-MB 8.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01781 K06620 - qsa:O6P43_006011 629.017