Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01779 ATGGCTCCCATTCTATTACTCATCGCTGTTACGTCCATTATGTTCATCACTATTTTTCCTGGGGATGCAGTGATCAGCCAAGTTTGGGAATATGATGCTCATGCTACCTTTTATGGTGACATGAAGGGTAACGAGACGATGCATGGAGCTTGCGGTTATGAAGATTTGTTCAAGCAAGGCTATGGACTTGAAACAGCAGCATTAAGCACTGCTCTTTTTAACAACGGATCGACGTGCGGTGCTTGTTTTGAAATAATGTGTGTGCACTCGAAGTGGTGCAAGCCAGGCGCTGCTCCAATCCATGTTACAGCCACCAATTTCTGTCCTCCAAACTATACCAAAACACATGATATTTGGTGCAACCCACCTCAAAAGCATTTTGATCTTTCCCTGCCAATGTTTCTCAAAATTGCAGAATACAAAGCTGGGGTTGTACCTGTTTCATTTCGAAGAGTGAGGTGTTTCAAGCGTGGTGGGATCCAATTTGAAGTGAAGGGAAACCCGTATTGGCTGTTAGTTCTAGTGTACAATGTTGGAGGGGATGGCCAAGTTGTGGACGTGAAAATCAAAGGCTCTAGTACTAGTTGGATACCCATGTCAAGGAATTGGGGCCAAAACTGGCAGACGTCGGCGAGGCTACAAGGACAAAGCTTGTCCTTCCAAGTGACTACTAGTGAAGGAAAGATGGTGCAGTCAGATAATGTTGCGCCAAACAACTGGGAATTTGGCAAGTCATATGAAGGAAAGAATTTTTAA 756 0.4431 MAPILLLIAVTSIMFITIFPGDAVISQVWEYDAHATFYGDMKGNETMHGACGYEDLFKQGYGLETAALSTALFNNGSTCGACFEIMCVHSKWCKPGAAPIHVTATNFCPPNYTKTHDIWCNPPQKHFDLSLPMFLKIAEYKAGVVPVSFRRVRCFKRGGIQFEVKGNPYWLLVLVYNVGGDGQVVDVKIKGSSTSWIPMSRNWGQNWQTSARLQGQSLSFQVTTSEGKMVQSDNVAPNNWEFGKSYEGKNF* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01779 251 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Pte6g01779 251 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Pte6g01779 251 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Pte6g01779 251 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Pte6g01779 251 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Pte6g01779 251 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Pte6g01779 251 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Pte6g01779 251 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Pte6g01779 251 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Pte6g01779 251 Gene3D - 22 154 IPR036908 -
Pte6g01779 251 SUPERFAMILY PHL pollen allergen 156 248 IPR036749 -
Pte6g01779 251 Gene3D - 159 251 IPR036749 -
Pte6g01779 251 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Pte6g01779 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 159 IPR007112 -
Pte6g01779 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Pte6g01779 251 SUPERFAMILY Barwin-like endoglucanases 29 177 IPR036908 -
Pte6g01779 251 CDD DPBB_EXPA_N 31 154 - -
Pte6g01779 251 SMART dpbb_1 65 149 IPR007112 -
Pte6g01779 251 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Pte6g01779 251 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Pte6g01779 251 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Pte6g01779 251 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Pte6g01779 251 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Pte6g01779 251 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Pte6g01779 251 PANTHER EXPANSIN-A15 17 251 IPR002963 GO:0009664
Pte6g01779 251 Pfam Lytic transglycolase 65 149 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01779 Pte-Chr6 34876408 34877282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01779 31 252 Expansin Gene Family AT5G39300 66.071 1.77e-111 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01779 - - qsa:O6P43_022898 387.497