Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01766 ATGGATGAAATAGATGTTCCTCCATTTTTTTTGTGCCCCATATCCTTAGAAATCATGAAAGATCCTGTAACTATATCTACAGGCATCACCTACGACCGAGGGAGCATTGAGAAATGGCTGTTCTCCGAGAACAAGAGTACCTGTCCAGTCACCAAGCAGCCACTATCAGACTCTACCGATCTGACCCCTAACCACACTCTCAGGCGACTGATACAGGCATGGTGCACCATGAATGCTTCTCATGGCGTCCAAAGGATTCCTACTCCCAGACCTCCTATCTCAAAGGCCGAAGTCAGTAAAATACTGAAAAATGCTACCAAGTCGCCACAACTGCTAACTCAATGTTTCAGAACTCTAAGAACATTCTCATCAGAGAGCGAAACAAACAGACGTTGCATAGAGGCCGCTGGTGCGGTTGAGTTCTTAGCCACCGTTTTGATCAACCACACAAGCTCCACGTCGTCACTGCTTGAAAATCCTTATTCAGATGAAGGATTTGAATTCAGAGCTAGTAGGAGCGATGAAGCGTTGAATATTCTCTACAACCTACGTATTTCTGAAGCTGGATTAAGGAGTCTGCTTCACGTGAAAAATGGTCAAGTGATCGACTCATTAACAAGAGTCATGCAGCGTGGGTACTATGAATCTCGTGCTCAATCTGTGCTCTTGTTGAAATCCATTCTCGAAGTGGCAGATCCTCAACATTTGTGCAGTATAAGATCGGAACTCTTCTTTGAACTTATACAAGTACTCAAGGATCAGATATCTCATCAGGCTTCAAAAGCAACCCTAAAAATACTGATACAAACATGTCCCTGGGGAAGGAACAAATTCAAAGCTGTGGAAGCAGGTGCTGTATCGGTTTTAGTCGAACTTCTTCTCAACTCTCAGCAAAGAAGACCAACAGAGATGATTCTTGTAACACTGGACTTGCTGTGTGGCTGTGCTGAGGGACGCGCAGACTTGTTGAGTCATGCGGCAGGGCTCGCTGTTGTGTCTAAGAGGATTCTTAGAGTGTCAACGCTGGCCACAGAGAAAGCTGTGAAGATTTTGTTTTATATTTCGAAGTACTCGGCGACCACAAATGTTCTTCATGAAATGGCCCATCTGGGTGTTGTGACAAAGCTTGGTTTAGTGCTTGAAATGGATGGTGAGAAAAAGGTCAAAAGCAAAGCTATGGAGATACTTAAAATGCATGCTCGTGCATGGAGGAATTCTCCATGTATACCTAGAAGTTTGAATGCTTCGTATCCGTCTTGA 1260 0.4421 MDEIDVPPFFLCPISLEIMKDPVTISTGITYDRGSIEKWLFSENKSTCPVTKQPLSDSTDLTPNHTLRRLIQAWCTMNASHGVQRIPTPRPPISKAEVSKILKNATKSPQLLTQCFRTLRTFSSESETNRRCIEAAGAVEFLATVLINHTSSTSSLLENPYSDEGFEFRASRSDEALNILYNLRISEAGLRSLLHVKNGQVIDSLTRVMQRGYYESRAQSVLLLKSILEVADPQHLCSIRSELFFELIQVLKDQISHQASKATLKILIQTCPWGRNKFKAVEAGAVSVLVELLLNSQQRRPTEMILVTLDLLCGCAEGRADLLSHAAGLAVVSKRILRVSTLATEKAVKILFYISKYSATTNVLHEMAHLGVVTKLGLVLEMDGEKKVKSKAMEILKMHARAWRNSPCIPRSLNASYPS* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01766 419 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Pte6g01766 419 PANTHER WDSAM1 PROTEIN 3 410 IPR045185 GO:0061630
Pte6g01766 419 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Pte6g01766 419 FunFam RING-type E3 ubiquitin transferase 1 84 - -
Pte6g01766 419 SUPERFAMILY RING/U-box 3 81 - -
Pte6g01766 419 Gene3D - 95 408 IPR011989 -
Pte6g01766 419 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Pte6g01766 419 SUPERFAMILY ARM repeat 106 399 IPR016024 -
Pte6g01766 419 CDD RING-Ubox_PUB 7 59 IPR045210 -
Pte6g01766 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01766 Pte-Chr6 34786961 34788696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01766 1 420 U-box Gene Family AT3G52450 53.378 1.35e-164 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01766 - - gmx:100811258 543.502