Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01762 ATGAATAACACATACGACTCTGGTGGAGCCATGAGCTCAGACTCGGATGGATTCCTGGGTTCTAGTAATCTTGGTGGTTTTGGCTATGGCATAGGACTGTCCGTTGGAGTTCTCCTTCTCATTACAACCATCACTCTCGTTTCTTATTTCTGCACTAGGACACAGCAACCAACTGTGCGAATTTCCCAGACGGCTCTTGAACCTTCCCCACATTGTGTTGTTGATATAGCCCTAGATGAAGCCACAATCAAGAGCTATCCTAAGCTGCGATACTCTGAAGCCAATATACAGAAGGCAGACACGACAGCATCATGTTGTTCCATATGTCTGGCTGATTACAAGAGCACAGATATGCTTAGGTTATTGCCTGAATGTGGTCACCTGTTCCATCTCAAATGTGTGGACCCGTGGTTGAGACTGCGCCCCACATGTCCGGTTTGCAGAACATCTCCAATTCCAACACCCTTTGCTACTCCTTTGGCTGAAACGGTTCCATTGGCAACGAGAAGGGATTCCTGA 519 0.4721 MNNTYDSGGAMSSDSDGFLGSSNLGGFGYGIGLSVGVLLLITTITLVSYFCTRTQQPTVRISQTALEPSPHCVVDIALDEATIKSYPKLRYSEANIQKADTTASCCSICLADYKSTDMLRLLPECGHLFHLKCVDPWLRLRPTCPVCRTSPIPTPFATPLAETVPLATRRDS* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01762 172 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Pte6g01762 172 SUPERFAMILY RING/U-box 82 154 - -
Pte6g01762 172 Pfam Ring finger domain 106 148 IPR001841 -
Pte6g01762 172 CDD RING-H2_EL5-like 105 148 - -
Pte6g01762 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 152 IPR013083 -
Pte6g01762 172 SMART ring_2 106 147 IPR001841 -
Pte6g01762 172 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 13 162 IPR045899 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01762 Pte-Chr6 34758893 34759411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01762 1 168 C3H Transcription Factor Family AT2G35910 56.818 3.10e-55 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01762 - - qsa:O6P43_009684 215.698