Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte6g01755 ATGAACAATAGTCTCGTATGCACTTTCGAAACATATCTGCAGAATGGTTTCTCTGATTTTGACTCGAAGGATTATTTGTTGAAGGTTTCGGTGGTAGCTGAAAAGCAGCCTGAAGGCCACATGACATCAGCTGCGGCATTTGTTGAAGGAGGGATACAGGAAGCCTGTGATGATGCGTGCAGCATATGCCTTGAGGAGTTTGGTGACAGTAATCCTGCAGCGATGACAACTTGCAGGCACGAGTTCCACATGCAGTGCATTCTTGAATGGTGCCAGAGAAGTTCTCAGTGTCCCATGTGTTGGCAACAGATTAGCATGAAAGACCCTGACAGTCAAGAATTGCTTGAGATAGTGGAACAAGAGAGACGCGTTAGGGATGCCGCATCAAGAAATGTCGCTCTATTTCATCATCCTGCATTCGGTGAATTTGAACTGCAACATTTTCCAGTGGTGACAAACAACTCCGATATTGAAGAGAGAATAATCCAACACCTGGCTGCTGCTGCTGCAATGCGAAGAGCCCATCATATTGGTCGGAGGGAAAGCCATAGAAACAGAACATATGCTAATGGCCGTCCACATTATTTTGTTTATTCAACTCCGTCTGGTGCTCACCCACCTGCTCCCATTTCAACGTCAAGAGGGGATAATGAACCGGTAGCAACTACTGTAGAAAATGCATCAGAAACATATAATGCCGTTGGAGATGAATCCCCTGTGCAAGGAGGATGTTTTCTACCATTTCAGCATCCGAGCTCTTCTTCAGCTGTTGGATCTAATGTCACCACATCCAATCATCAGGATACTTTTTCAAACACAAGAAACTCAGCTCTATCATCCGTCCAGGATGGGGCAGGACCATCTGATTTTCAATCATTTTCTGACTCTCTCAGATCAAAACTCAGTTCATTGTCCATGAGATATAAGGAGTCGATCTCAAAGAGCACTAGGTGTTGGAAAGAGAGGTTGTTCTCTCGCAATAATTCATTGCCACCTACTGTTTCTGATGGTCGAGGAGAATTGAATGCTGAAATTGCTAGTGAACCTTTTATGGAAGACAGTACCAGAGGTGAAGGTGCTTCTGTAACCAATCTTTTGGATGGTAGTTCTATAGAGAGGAGCATTCAGGATAATGCTGAAGTTCAAGGTGCAAATCCCTCAAGTGAGAATGATAGCTCGGTTCCTCGCACTGGAACATCTCCTTAG 1206 0.4453 MNNSLVCTFETYLQNGFSDFDSKDYLLKVSVVAEKQPEGHMTSAAAFVEGGIQEACDDACSICLEEFGDSNPAAMTTCRHEFHMQCILEWCQRSSQCPMCWQQISMKDPDSQELLEIVEQERRVRDAASRNVALFHHPAFGEFELQHFPVVTNNSDIEERIIQHLAAAAAMRRAHHIGRRESHRNRTYANGRPHYFVYSTPSGAHPPAPISTSRGDNEPVATTVENASETYNAVGDESPVQGGCFLPFQHPSSSSAVGSNVTTSNHQDTFSNTRNSALSSVQDGAGPSDFQSFSDSLRSKLSSLSMRYKESISKSTRCWKERLFSRNNSLPPTVSDGRGELNAEIASEPFMEDSTRGEGASVTNLLDGSSIERSIQDNAEVQGANPSSENDSSVPRTGTSP* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte6g01755 401 SUPERFAMILY RING/U-box 52 107 - -
Pte6g01755 401 ProSiteProfiles Zinc finger RING-type profile. 60 100 IPR001841 -
Pte6g01755 401 MobiDBLite consensus disorder prediction 374 401 - -
Pte6g01755 401 MobiDBLite consensus disorder prediction 256 291 - -
Pte6g01755 401 SMART ring_2 60 100 IPR001841 -
Pte6g01755 401 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 44 109 - -
Pte6g01755 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 111 IPR013083 -
Pte6g01755 401 Pfam Ring finger domain 59 100 IPR001841 -
Pte6g01755 401 FunFam E3 ubiquitin-protein ligase RHF2A isoform X1 38 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte6g01755 Pte-Chr6 34717000 34719984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte6g01755 57 108 C3H Transcription Factor Family AT4G00335 44.231 1.59e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte6g01755 K19043 - cave:132191879 384.415